CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid

Predictor Summary:

plastid 3
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plastid
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75406	Canola	endoplasmic reticulum, plastid	96.11	95.82
CDX72454	Canola	extracellular	63.17	64.13
CDY49279	Canola	extracellular	63.17	64.13
AT2G17305.1	Thale cress	cytosol	44.61	54.98
CDX93985	Canola	cytosol, nucleus, plastid	12.28	49.4
CDY58678	Canola	cytosol	14.97	35.71
CDY66300	Canola	cytosol	41.02	29.4
CDX93984	Canola	cytosol, nucleus, plasma membrane, plastid	23.05	28.41
CDY16441	Canola	plasma membrane	39.82	28.3
CDY07436	Canola	plasma membrane	39.22	27.87
CDY61650	Canola	plasma membrane	38.62	27.45
CDY52573	Canola	plasma membrane, vacuole	38.02	27.02
CDY70831	Canola	plasma membrane	29.34	26.13
CDY16442	Canola	plasma membrane	21.26	21.71
KRH73712	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.96	20.69
KRH34702	Soybean	extracellular, plasma membrane	28.44	20.17
KRH73711	Soybean	plasma membrane	27.25	19.53
KRH46107	Soybean	endoplasmic reticulum, plasma membrane	26.95	17.08
KRH37978	Soybean	endoplasmic reticulum, plasma membrane	26.65	16.89

Protein Annotations

EnsemblPlants:CDX69031	EnsemblPlantsGene:GSBRNA2T00130787001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR31639	PFAM:PF00646	PFAM:PF08387	PFscan:PS50181	ProteinID:CDX69031	ProteinID:CDX69031.1
SUPFAM:SSF81383	UniParc:UPI0004EEDDB6	MapMan:35.1	:	:	:

Description

BnaC01g04220D

Coordinates

chrLK031789:-:2557009..2558518

Molecular Weight (calculated)

38690.1 Da

IEP (calculated)

8.223

GRAVY (calculated)

-0.176

Length

334 amino acids

Sequence
(BLAST)

001: MDSGTKPNLI SNLPDCLLVL IISFLPFKQS VQTSVLAKRW KNLCRETTNL VFKESEFGLN QFVVDTEAKN SETRALFVSI MHQWISRFTG NTMETFELCL
101: PEPVGFEEDI MSLIEFAATK QTKNLVINFS SSNSRQPPGA LHIKLIYFQK TGLDITRLFS NLIYVRNLTI CPFLLEMIQD CDDPMKLHDP MKTRHLVIKT
201: HMYPHEFGGI TIFLNSCPEL ESLTFETYTT GPIVMSQRYW PLIHPKTFWL NNKTYECLER TLKAVKVENF CGISNELHVL QYLIRTGRVM ERLDLHAAKR
301: LNNEQRRLVL TAAEEFQKNV ERGSRHLRVT LHNA

Best Arabidopsis Sequence Match ( AT2G17305.1 )
(BLAST)

001: MVEPDRVFFV RVMREWISRF TGKIIENFEI HLSQPMGFAG DIMSLTEFAT SRQVKNLVLD FSDPIQRNLS QAQQIIRDGL LRCRYPQKNE LDVSHLFFNL
101: LYVRNLTVCS FFLQVLQDCD DPMALHVSMK TRHLVMKTNM HANDFVGISI FLNSCPELES LTFDLVTSSR FVRAPSPLVI DPVSHWLTSK SYECLEKTLK
201: VVKITKFRGS SNELHMLQYL LRTGCVMERV DLYEAEGLNH NQKRWVLAGV EEVQQNFKRA SRHLRITLHN A

Arabidopsis Description

F-box/LRR protein [Source:UniProtKB/TrEMBL;Acc:Q3EBZ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.