CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017630.1-P	Field mustard	extracellular	98.78	98.78
CDX72454	Canola	extracellular	97.26	97.26
CDX69031	Canola	endoplasmic reticulum, plastid	64.13	63.17
CDX75406	Canola	endoplasmic reticulum, plastid	64.13	62.99
AT2G17305.1	Thale cress	cytosol	45.29	54.98
CDX93985	Canola	cytosol, nucleus, plastid	11.85	46.99
CDY58678	Canola	cytosol	14.59	34.29
CDY66300	Canola	cytosol	38.91	27.47
CDX93984	Canola	cytosol, nucleus, plasma membrane, plastid	21.58	26.2
CDY07436	Canola	plasma membrane	37.39	26.17
CDY61650	Canola	plasma membrane	37.08	25.96
CDY52573	Canola	plasma membrane, vacuole	36.78	25.74
CDY16441	Canola	plasma membrane	36.78	25.74
CDY70831	Canola	plasma membrane	27.96	24.53
KRH73712	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	18.84	21.38
KRH73711	Soybean	plasma membrane	29.79	21.03
KRH34702	Soybean	extracellular, plasma membrane	30.09	21.02
CDY16442	Canola	plasma membrane	19.76	19.88
KRH46107	Soybean	endoplasmic reticulum, plasma membrane	29.18	18.22
KRH37978	Soybean	endoplasmic reticulum, plasma membrane	28.88	18.03

Protein Annotations

EnsemblPlants:CDY49279	EnsemblPlantsGene:GSBRNA2T00092694001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:FBD	InterPro:IPR001810	PANTHER:PTHR31639	PFAM:PF08387	PFscan:PS50181
ProteinID:CDY49279	ProteinID:CDY49279.1	SMART:SM00579	SUPFAM:SSF81383	UniParc:UPI0004EEEA72	UniProt:A0A078IIS7
MapMan:35.1	:	:	:	:	:

Description

BnaA03g50920DBnaA03g50920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IIS7]

Coordinates

chrLK032822:-:65633..66819

Molecular Weight (calculated)

37994.4 Da

IEP (calculated)

7.278

GRAVY (calculated)

-0.086

Length

329 amino acids

Sequence
(BLAST)

001: MVSRRKSDLL SNLPDCLLVT IISLLPFKQS VQTSILARRW KNLCLETTNL VFKESEFVNL STDTETIKSK RSLFVSTMCQ WISSFTGEVI ESLEFSLSEP
101: VSFEKAIVSL TEFAASKQIK NITIDFSSPA SRKIDVIEHL VTLMHYQNTE FDITRIFFNL IHVRNLTICS FLIQMIQECE DPMEMHDAME ARHLVMKTNL
201: HANEFVGIKI FLNSCPELES LTFHMDTTER IVRVSMPLDP KAFWLTNDTY ECLERTLKLV KIKNFRGGPN ELHVLKYLMR RGLVMEQLDL YEAKGLNDGQ
301: RRLVLTAAEE VQKNVERGSK HLRITLHKA

Best Arabidopsis Sequence Match ( AT2G17305.1 )
(BLAST)

001: MVEPDRVFFV RVMREWISRF TGKIIENFEI HLSQPMGFAG DIMSLTEFAT SRQVKNLVLD FSDPIQRNLS QAQQIIRDGL LRCRYPQKNE LDVSHLFFNL
101: LYVRNLTVCS FFLQVLQDCD DPMALHVSMK TRHLVMKTNM HANDFVGISI FLNSCPELES LTFDLVTSSR FVRAPSPLVI DPVSHWLTSK SYECLEKTLK
201: VVKITKFRGS SNELHMLQYL LRTGCVMERV DLYEAEGLNH NQKRWVLAGV EEVQQNFKRA SRHLRITLHN A

Arabidopsis Description

F-box/LRR protein [Source:UniProtKB/TrEMBL;Acc:Q3EBZ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.