Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66300 | Canola | cytosol | 87.08 | 50.64 |
| CDY58678 | Canola | cytosol | 19.93 | 38.57 |
| AT3G62230.1 | Thale cress | endoplasmic reticulum | 49.45 | 29.07 |
| CDX75406 | Canola | endoplasmic reticulum, plastid | 28.78 | 23.28 |
| CDY16441 | Canola | plasma membrane | 40.22 | 23.19 |
| CDX69031 | Canola | endoplasmic reticulum, plastid | 28.41 | 23.05 |
| CDY52573 | Canola | plasma membrane, vacuole | 39.85 | 22.98 |
| CDY07436 | Canola | plasma membrane | 39.48 | 22.77 |
| CDY61650 | Canola | plasma membrane | 39.48 | 22.77 |
| CDY49279 | Canola | extracellular | 26.2 | 21.58 |
| CDX72454 | Canola | extracellular | 26.2 | 21.58 |
| CDY70831 | Canola | plasma membrane | 27.31 | 19.73 |
| KRH34702 | Soybean | extracellular, plasma membrane | 31.0 | 17.83 |
| KRH73711 | Soybean | plasma membrane | 29.89 | 17.38 |
| KRH46107 | Soybean | endoplasmic reticulum, plasma membrane | 27.68 | 14.23 |
| CDY16442 | Canola | plasma membrane | 16.97 | 14.07 |
| KRH37978 | Soybean | endoplasmic reticulum, plasma membrane | 27.31 | 14.04 |
| KRH73712 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 14.39 | 13.45 |
| CDX93985 | Canola | cytosol, nucleus, plastid | 0.74 | 2.41 |
Protein Annotations
| EnsemblPlants:CDX93984 | EnsemblPlantsGene:GSBRNA2T00156842001 | InterPro:FBD | PANTHER:PTHR31639 | PFAM:PF08387 | ProteinID:CDX93984 |
| ProteinID:CDX93984.1 | SMART:SM00579 | UniParc:UPI0004EE0F10 | MapMan:35.1 | : | : |
Description
BnaC04g21430D
Coordinates
chrLK031878:-:1153269..1154084
Molecular Weight (calculated)
30826.4 Da
IEP (calculated)
7.368
GRAVY (calculated)
-0.135
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLLSKSPLL ESLTVRNCWN VNLESITGVN NRLRELVFEN CDFGTEYTLL DLPNIKIFKY TGSFHYFQFL TVNRRMEEAY LDYGAETDDE IGQLFCDVLY
101: DLLSARKLTV CPFLIKAIKD SDDPVKLNAP METRHLVIKT SLSPDEFVGI RLMINSCPEL ETLTLQMLPP VPVARTNPGF NPKSYWAFPI SHKCLKKTLK
201: VVEVRNFSGG TYELIVLRYL IRSGRVLERV DLYLPVGTSE SEKSSVRATM STLGDEGVAS SKRLRIRQHD G
101: DLLSARKLTV CPFLIKAIKD SDDPVKLNAP METRHLVIKT SLSPDEFVGI RLMINSCPEL ETLTLQMLPP VPVARTNPGF NPKSYWAFPI SHKCLKKTLK
201: VVEVRNFSGG TYELIVLRYL IRSGRVLERV DLYLPVGTSE SEKSSVRATM STLGDEGVAS SKRLRIRQHD G
001: MDSGSAVDII STLSDFLLVL IISNLSFKEA LSTSRLSTRW RHICRETRNI SFREDEIVTF ADDSVARYYQ RAALVAYMVG WVNNFTGGVV ESFELRLSNS
101: YAFEEGVTTL IEFAVSKNVK HLFLDLSEPR WVTNNDAAQL EPGLIKLPES FYKITSLVTL KLFGCRFEPS RLAKPGMVKT MFFRWIRLEM LSALIAKTPL
201: LEILNIKNCW EIGLDAITGY NDRLMKLVFK YCSFSAQQTT LDVPNIQIFK YFGKVYRFEF ASANKLMEEA YLDYREESRY NVSAGAIISG FLYSMLSAKT
301: FTICPYVLQL IQECEDPVRL KAPMETRQLV LKTNFEPNEF VGIRFMLNSS PYLETLSFQM VGPRPIEEMV PQIDPEAYWG QNTSHECLKK TLKKVEVWSF
401: YGGTHELRVL EYLIRYGRML ERVDLYQPIG LDDIQLLPIR AAADRVGEFE ARSENLVVTF Y
101: YAFEEGVTTL IEFAVSKNVK HLFLDLSEPR WVTNNDAAQL EPGLIKLPES FYKITSLVTL KLFGCRFEPS RLAKPGMVKT MFFRWIRLEM LSALIAKTPL
201: LEILNIKNCW EIGLDAITGY NDRLMKLVFK YCSFSAQQTT LDVPNIQIFK YFGKVYRFEF ASANKLMEEA YLDYREESRY NVSAGAIISG FLYSMLSAKT
301: FTICPYVLQL IQECEDPVRL KAPMETRQLV LKTNFEPNEF VGIRFMLNSS PYLETLSFQM VGPRPIEEMV PQIDPEAYWG QNTSHECLKK TLKKVEVWSF
401: YGGTHELRVL EYLIRYGRML ERVDLYQPIG LDDIQLLPIR AAADRVGEFE ARSENLVVTF Y
Arabidopsis Description
F-box protein At3g62230 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Q1]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.