Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 3
- endoplasmic reticulum 3
- vacuole 4
- plasma membrane 4
- golgi 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029003.1-P | Field mustard | cytosol, plasma membrane, plastid | 92.55 | 92.36 |
| CDY16441 | Canola | plasma membrane | 85.11 | 85.11 |
| CDY58678 | Canola | cytosol | 25.11 | 84.29 |
| CDY16442 | Canola | plasma membrane | 58.09 | 83.49 |
| CDY70831 | Canola | plasma membrane | 66.6 | 83.47 |
| CDY07436 | Canola | plasma membrane | 81.06 | 81.06 |
| CDY61650 | Canola | plasma membrane | 79.79 | 79.79 |
| AT1G56400.1 | Thale cress | cytosol, endoplasmic reticulum, plastid | 46.17 | 45.3 |
| AT5G54820.1 | Thale cress | plasma membrane | 45.32 | 45.13 |
| CDX93985 | Canola | cytosol, nucleus, plastid | 7.87 | 44.58 |
| AT3G29830.1 | Thale cress | cytosol | 42.55 | 43.1 |
| CDX93984 | Canola | cytosol, nucleus, plasma membrane, plastid | 22.98 | 39.85 |
| CDY66300 | Canola | cytosol | 38.09 | 38.41 |
| CDX69031 | Canola | endoplasmic reticulum, plastid | 27.02 | 38.02 |
| CDX75406 | Canola | endoplasmic reticulum, plastid | 26.6 | 37.31 |
| CDY49279 | Canola | extracellular | 25.74 | 36.78 |
| CDX72454 | Canola | extracellular | 25.53 | 36.47 |
| KRH34702 | Soybean | extracellular, plasma membrane | 29.57 | 29.51 |
| KRH73711 | Soybean | plasma membrane | 27.87 | 28.11 |
| KRH73712 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 15.53 | 25.17 |
| KRH46107 | Soybean | endoplasmic reticulum, plasma membrane | 27.23 | 24.29 |
| KRH37978 | Soybean | endoplasmic reticulum, plasma membrane | 26.38 | 23.53 |
Protein Annotations
| EnsemblPlants:CDY52573 | EnsemblPlantsGene:GSBRNA2T00007283001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31639 | PFAM:PF00646 | PFscan:PS50181 | ProteinID:CDY52573 |
| ProteinID:CDY52573.1 | SUPFAM:SSF81383 | UniParc:UPI0004EE7040 | UniProt:A0A078IU93 | MapMan:35.1 | : |
Description
BnaC03g71810DBnaC03g71810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IU93]
Coordinates
chrLK033104:+:61509..63832
Molecular Weight (calculated)
53502.5 Da
IEP (calculated)
5.497
GRAVY (calculated)
-0.059
Length
470 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSDQADII SNLPDVLLVL IISCLSFKEC VQTSRLSKRW RSVYLQTRNV SFKESDFLSP SVYANPISWV RARVAFVDYV CSWVARIDDQ PIDTFGISIS
101: YPKKYLDVIE SLIAFAVRKR VKALVLDFSN PAWTTFHDVN LDELVVEIPQ SVYDLATLES LKVGACKKFD PAKLSNLGKL KTVSFGCMVL TNLEPFLKTS
201: RVESLTINDC RELDFDTIKG NMREVAIKNC DFSINCTFHL PRVDILKYSG DLFCFEFDNM NTIISEVEFD FRVLDNNNDE NDSTTAEGGM LCHLLNNLLD
301: DGGRTATTLT VCPFLLKMIP RSEHPHFLRP METKHLVLKT ELHPREFNGI RLLLVNCPKL ETLTIDLLPP SPIATASSYA GIDPQTYWMQ NISYECLRET
401: LKAVVVKNFT GGANELHIVK FFIQSECEHL ERVELYMPFD LDEGRKMFAN AKSEMLQRSS NRVQVVVHNS
101: YPKKYLDVIE SLIAFAVRKR VKALVLDFSN PAWTTFHDVN LDELVVEIPQ SVYDLATLES LKVGACKKFD PAKLSNLGKL KTVSFGCMVL TNLEPFLKTS
201: RVESLTINDC RELDFDTIKG NMREVAIKNC DFSINCTFHL PRVDILKYSG DLFCFEFDNM NTIISEVEFD FRVLDNNNDE NDSTTAEGGM LCHLLNNLLD
301: DGGRTATTLT VCPFLLKMIP RSEHPHFLRP METKHLVLKT ELHPREFNGI RLLLVNCPKL ETLTIDLLPP SPIATASSYA GIDPQTYWMQ NISYECLRET
401: LKAVVVKNFT GGANELHIVK FFIQSECEHL ERVELYMPFD LDEGRKMFAN AKSEMLQRSS NRVQVVVHNS
001: MDSIQQDRLS SLPDILLIMI ISFLPLKECV RTSVLSKRWR YLCLETTNLS FKESDYVNPD ITDAEYSRIV AYRSFFCSVD KWVSITQHQV VESFEICFSH
101: LVGFEDKIDA LIEYAVSTRV KNLVVDLSNP SWRSNGDISY RHFMYTLPKS VYSLTTLESL KIYGCKFDPS KFVNPVLLRS LSIGWVRLEN LHSLLSKSPS
201: LQSLSIKNCW GVDITSMAGQ FRELVIEHSD FSYMQCAFEL PRIHSFKYSG ELFEFYFDVV NVIIPNVYLD FGEERVYDLQ SQSSRISGEV ISRIINDLRA
301: AETLTVCPYI LQVIPECEKP SDLLQPMETR HLVLRTKMHT KEFNGIILLL NNCPNLETLG FDILTPCPFS ATSSDEGIDP KTYWMQKRTC KSLRKTLKVV
401: VIRNFCGSSN ELNVLRYLIR SASGAGDALE RVELYVPNGM EESQAMVVFA KAEMLQRTSK HVQVLCAQLL KK
101: LVGFEDKIDA LIEYAVSTRV KNLVVDLSNP SWRSNGDISY RHFMYTLPKS VYSLTTLESL KIYGCKFDPS KFVNPVLLRS LSIGWVRLEN LHSLLSKSPS
201: LQSLSIKNCW GVDITSMAGQ FRELVIEHSD FSYMQCAFEL PRIHSFKYSG ELFEFYFDVV NVIIPNVYLD FGEERVYDLQ SQSSRISGEV ISRIINDLRA
301: AETLTVCPYI LQVIPECEKP SDLLQPMETR HLVLRTKMHT KEFNGIILLL NNCPNLETLG FDILTPCPFS ATSSDEGIDP KTYWMQKRTC KSLRKTLKVV
401: VIRNFCGSSN ELNVLRYLIR SASGAGDALE RVELYVPNGM EESQAMVVFA KAEMLQRTSK HVQVLCAQLL KK
Arabidopsis Description
Putative F-box/LRR-repeat protein At5g54820 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFU7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.