Factsheet for Bra029003.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52573	Canola	plasma membrane, vacuole	92.36	92.55
Bra004104.1-P	Field mustard	cytosol	26.11	87.86
Bra009781.1-P	Field mustard	plasma membrane	83.23	83.4
Bra039758.1-P	Field mustard	plasma membrane	82.59	82.77
Bra004102.1-P	Field mustard	plasma membrane	53.29	78.19
AT5G54820.1	Thale cress	plasma membrane	45.86	45.76
AT1G56400.1	Thale cress	cytosol, endoplasmic reticulum, plastid	45.01	44.26
AT3G29830.1	Thale cress	cytosol	42.04	42.67
Bra014407.1-P	Field mustard	cytosol	37.58	37.98
Bra011503.1-P	Field mustard	extracellular, plastid	26.33	37.01
Bra017630.1-P	Field mustard	extracellular	24.63	35.26
KRH34702	Soybean	extracellular, plasma membrane	29.94	29.94
KRH73711	Soybean	plasma membrane	28.03	28.33
KRH73712	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	15.92	25.86
KRH46107	Soybean	endoplasmic reticulum, plasma membrane	27.39	24.48
KRH37978	Soybean	endoplasmic reticulum, plasma membrane	26.33	23.53

Protein Annotations

EnsemblPlants:Bra029003.1	EnsemblPlants:Bra029003.1-P	EnsemblPlantsGene:Bra029003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31639	PFAM:PF00646	SEG:seg
SUPFAM:SSF81383	UniParc:UPI000253FEE4	UniProt:M4EJN7	MapMan:35.1	:	:

Description

AT5G54820 (E=5e-108) | F-box family protein

Coordinates

chrA03:-:5812492..5814825

Molecular Weight (calculated)

53886.7 Da

IEP (calculated)

5.238

GRAVY (calculated)

-0.138

Length

471 amino acids

Sequence
(BLAST)

001: MDPSDQADRI SNLPDILLVL IISCLSFKEC VHTRCLSKRW RSVYLETRNV SFKESDFLSP SVYANPISWI RARDAFVDYV CSWVARIDDQ HIDTFGISVS
101: YPKTYLDVIE SLIAFAVRKR VKALVLDFSN PAWTTFHDVN LDELVVEIPQ SVYDLATLES LKLGAVKQFD PTKLSNPGKL KTVSFGWMVL TNFEPLLKTS
201: RFESLTINGC RELDFDTIEG NMRKVAIKNC DFSINCTFDL PRVDILKYSG DLFRFEFDNM NTIISEVEFD FRVLDNNNDE SNDSTTAEGG MLCHLLNNLL
301: DDGGRTATTL TVCPFLLKMI PRSEHPHFLR PMETKHLVLK TELHPREFNG IRLLLLNCPK LETLTIDLLP PSPIATASSY AGIDPQTYWM QNISYECQRE
401: TLKAVVVKNF AGGENELHIV KFFIQSECEH LERVELYMPF DLDEGRKMFA NAKSEMLQRS SNRVQVVVHN S

Best Arabidopsis Sequence Match ( AT5G54820.1 )
(BLAST)

001: MDSIQQDRLS SLPDILLIMI ISFLPLKECV RTSVLSKRWR YLCLETTNLS FKESDYVNPD ITDAEYSRIV AYRSFFCSVD KWVSITQHQV VESFEICFSH
101: LVGFEDKIDA LIEYAVSTRV KNLVVDLSNP SWRSNGDISY RHFMYTLPKS VYSLTTLESL KIYGCKFDPS KFVNPVLLRS LSIGWVRLEN LHSLLSKSPS
201: LQSLSIKNCW GVDITSMAGQ FRELVIEHSD FSYMQCAFEL PRIHSFKYSG ELFEFYFDVV NVIIPNVYLD FGEERVYDLQ SQSSRISGEV ISRIINDLRA
301: AETLTVCPYI LQVIPECEKP SDLLQPMETR HLVLRTKMHT KEFNGIILLL NNCPNLETLG FDILTPCPFS ATSSDEGIDP KTYWMQKRTC KSLRKTLKVV
401: VIRNFCGSSN ELNVLRYLIR SASGAGDALE RVELYVPNGM EESQAMVVFA KAEMLQRTSK HVQVLCAQLL KK

Arabidopsis Description

Putative F-box/LRR-repeat protein At5g54820 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFU7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.