Factsheet for Bra009781.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70831	Canola	plasma membrane	79.15	99.2
Bra004104.1-P	Field mustard	cytosol	26.38	88.57
Bra039758.1-P	Field mustard	plasma membrane	85.11	85.11
Bra029003.1-P	Field mustard	cytosol, plasma membrane, plastid	83.4	83.23
Bra004102.1-P	Field mustard	plasma membrane	56.6	82.87
AT1G56400.1	Thale cress	cytosol, endoplasmic reticulum, plastid	45.53	44.68
AT5G54820.1	Thale cress	plasma membrane	43.19	43.01
AT3G29830.1	Thale cress	cytosol	41.7	42.24
Bra011503.1-P	Field mustard	extracellular, plastid	27.66	38.81
Bra017630.1-P	Field mustard	extracellular	25.74	36.78
Bra014407.1-P	Field mustard	cytosol	36.17	36.48
KRH34702	Soybean	extracellular, plasma membrane	28.3	28.24
KRH73711	Soybean	plasma membrane	26.6	26.82
KRH46107	Soybean	endoplasmic reticulum, plasma membrane	27.66	24.67
KRH73712	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	15.11	24.48
KRH37978	Soybean	endoplasmic reticulum, plasma membrane	25.96	23.15

Protein Annotations

EnsemblPlants:Bra009781.1	EnsemblPlants:Bra009781.1-P	EnsemblPlantsGene:Bra009781	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	InterPro:IPR001810	PANTHER:PTHR31639	PFAM:PF00646
PFscan:PS50181	SEG:seg	SMART:SM00579	SUPFAM:SSF81383	UniParc:UPI000253F1FC	UniProt:M4CZY4
MapMan:35.1	:	:	:	:	:

Description

AT5G54820 (E=2e-103) | F-box family protein

Coordinates

chrA06:-:17209263..17211627

Molecular Weight (calculated)

53703.9 Da

IEP (calculated)

6.030

GRAVY (calculated)

-0.131

Length

470 amino acids

Sequence
(BLAST)

001: MDSCDQPDII SNLPDVLLVL IISCLSFKEC VQTCALSKRW RSVYLETRNV SFKETDFLSP SVDANPIRNA LGRIVFVDYV RRWVIRIHDQ PIDTFGISIS
101: YPETYIDLIE SLIAFAVRKK VKNLVLDFSN PAWRTFHDVT LDELVVEIPQ SVYELATLES LKVGACKKFD PSKLSNLGKL NTISFGWMEL TDPKPLLKTS
201: RVKSLTINDC GELYFDTIKG NMREVAVKNC DFFPNCTFNL PSVDILKYSG DLLPFEFDNM NTIISEVEFD FRVLDNNNDE SNDSNTAEGG MLCHLLNNLL
301: DYGGRSAKTL TVCPFLLKMI PRSEHPHVLH PMETKHLVLK SELHPREFNG IRLLLMNCPN LETLTIDLLP PSPIATASSY ADIDPETYWM QNISYECQRE
401: TLKAVAVKNF FGGSKELHIV KFFIRGCERL ERVELYMPFD LDKGRKRLAY AKSEMLQRSS NRVQVVVHNS

Best Arabidopsis Sequence Match ( AT5G54820.1 )
(BLAST)

001: MDSIQQDRLS SLPDILLIMI ISFLPLKECV RTSVLSKRWR YLCLETTNLS FKESDYVNPD ITDAEYSRIV AYRSFFCSVD KWVSITQHQV VESFEICFSH
101: LVGFEDKIDA LIEYAVSTRV KNLVVDLSNP SWRSNGDISY RHFMYTLPKS VYSLTTLESL KIYGCKFDPS KFVNPVLLRS LSIGWVRLEN LHSLLSKSPS
201: LQSLSIKNCW GVDITSMAGQ FRELVIEHSD FSYMQCAFEL PRIHSFKYSG ELFEFYFDVV NVIIPNVYLD FGEERVYDLQ SQSSRISGEV ISRIINDLRA
301: AETLTVCPYI LQVIPECEKP SDLLQPMETR HLVLRTKMHT KEFNGIILLL NNCPNLETLG FDILTPCPFS ATSSDEGIDP KTYWMQKRTC KSLRKTLKVV
401: VIRNFCGSSN ELNVLRYLIR SASGAGDALE RVELYVPNGM EESQAMVVFA KAEMLQRTSK HVQVLCAQLL KK

Arabidopsis Description

Putative F-box/LRR-repeat protein At5g54820 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFU7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.