Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 1
- mitochondrion 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07436 | Canola | plasma membrane | 99.29 | 29.57 |
| Bra039758.1-P | Field mustard | plasma membrane | 92.86 | 27.66 |
| Bra009781.1-P | Field mustard | plasma membrane | 88.57 | 26.38 |
| Bra029003.1-P | Field mustard | cytosol, plasma membrane, plastid | 87.86 | 26.11 |
| Bra011503.1-P | Field mustard | extracellular, plastid | 38.57 | 16.12 |
| Bra017630.1-P | Field mustard | extracellular | 37.14 | 15.81 |
| AT5G54820.1 | Thale cress | plasma membrane | 50.71 | 15.04 |
| AT1G56400.1 | Thale cress | cytosol, endoplasmic reticulum, plastid | 46.43 | 13.57 |
| AT3G29830.1 | Thale cress | cytosol | 40.0 | 12.07 |
| Bra014407.1-P | Field mustard | cytosol | 38.57 | 11.59 |
| KRH73711 | Soybean | plasma membrane | 25.0 | 7.51 |
| KRH34702 | Soybean | extracellular, plasma membrane | 22.14 | 6.58 |
| KRH73712 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 13.57 | 6.55 |
| KRH37978 | Soybean | endoplasmic reticulum, plasma membrane | 23.57 | 6.26 |
| KRH46107 | Soybean | endoplasmic reticulum, plasma membrane | 23.57 | 6.26 |
| Bra004102.1-P | Field mustard | plasma membrane | 0.71 | 0.31 |
Protein Annotations
Description
AT5G54820 (E=4e-037) | F-box family protein
Coordinates
chrA07:+:16867528..16868498
Molecular Weight (calculated)
16130.8 Da
IEP (calculated)
7.601
GRAVY (calculated)
-0.171
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: METKHLVLKT ELHPREFNGI RLLLMNCPNL ETLTIDLLPP SPIAMASSYA GIDPQTYWMQ NISYECQRET LKAVIMKNFI GGAKELHIVK FFIRSGCERL
101: ERVELYMPFD LDDGRKVFAH AKSEMLQRSA NHLQVVVHNS
101: ERVELYMPFD LDDGRKVFAH AKSEMLQRSA NHLQVVVHNS
001: MDSIQQDRLS SLPDILLIMI ISFLPLKECV RTSVLSKRWR YLCLETTNLS FKESDYVNPD ITDAEYSRIV AYRSFFCSVD KWVSITQHQV VESFEICFSH
101: LVGFEDKIDA LIEYAVSTRV KNLVVDLSNP SWRSNGDISY RHFMYTLPKS VYSLTTLESL KIYGCKFDPS KFVNPVLLRS LSIGWVRLEN LHSLLSKSPS
201: LQSLSIKNCW GVDITSMAGQ FRELVIEHSD FSYMQCAFEL PRIHSFKYSG ELFEFYFDVV NVIIPNVYLD FGEERVYDLQ SQSSRISGEV ISRIINDLRA
301: AETLTVCPYI LQVIPECEKP SDLLQPMETR HLVLRTKMHT KEFNGIILLL NNCPNLETLG FDILTPCPFS ATSSDEGIDP KTYWMQKRTC KSLRKTLKVV
401: VIRNFCGSSN ELNVLRYLIR SASGAGDALE RVELYVPNGM EESQAMVVFA KAEMLQRTSK HVQVLCAQLL KK
101: LVGFEDKIDA LIEYAVSTRV KNLVVDLSNP SWRSNGDISY RHFMYTLPKS VYSLTTLESL KIYGCKFDPS KFVNPVLLRS LSIGWVRLEN LHSLLSKSPS
201: LQSLSIKNCW GVDITSMAGQ FRELVIEHSD FSYMQCAFEL PRIHSFKYSG ELFEFYFDVV NVIIPNVYLD FGEERVYDLQ SQSSRISGEV ISRIINDLRA
301: AETLTVCPYI LQVIPECEKP SDLLQPMETR HLVLRTKMHT KEFNGIILLL NNCPNLETLG FDILTPCPFS ATSSDEGIDP KTYWMQKRTC KSLRKTLKVV
401: VIRNFCGSSN ELNVLRYLIR SASGAGDALE RVELYVPNGM EESQAMVVFA KAEMLQRTSK HVQVLCAQLL KK
Arabidopsis Description
Putative F-box/LRR-repeat protein At5g54820 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFU7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.