Factsheet for Bra017630.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49279	Canola	extracellular	98.78	98.78
Bra011503.1-P	Field mustard	extracellular, plastid	63.83	62.69
AT2G17305.1	Thale cress	cytosol	44.38	53.87
Bra004104.1-P	Field mustard	cytosol	15.81	37.14
Bra014407.1-P	Field mustard	cytosol	38.6	27.25
Bra009781.1-P	Field mustard	plasma membrane	36.78	25.74
Bra039758.1-P	Field mustard	plasma membrane	36.17	25.32
Bra029003.1-P	Field mustard	cytosol, plasma membrane, plastid	35.26	24.63
KRH73712	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	18.84	21.38
Bra004102.1-P	Field mustard	plasma membrane	20.36	20.87
KRH73711	Soybean	plasma membrane	29.48	20.82
KRH34702	Soybean	extracellular, plasma membrane	29.79	20.81
KRH46107	Soybean	endoplasmic reticulum, plasma membrane	29.18	18.22
KRH37978	Soybean	endoplasmic reticulum, plasma membrane	28.88	18.03

Protein Annotations

EnsemblPlants:Bra017630.1	EnsemblPlants:Bra017630.1-P	EnsemblPlantsGene:Bra017630	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	InterPro:IPR001810	PANTHER:PTHR31639	PFAM:PF08387
PFscan:PS50181	SMART:SM00579	SUPFAM:SSF81383	UniParc:UPI00025411F6	UniProt:M4DM98	MapMan:35.1

Description

AT2G17305 (E=3e-084) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G54820.1); Has 41 Blast hits to 26 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA03:-:29421206..29422393

Molecular Weight (calculated)

37963.4 Da

IEP (calculated)

7.838

GRAVY (calculated)

-0.073

Length

329 amino acids

Sequence
(BLAST)

001: MVSRRKSDLL SNLPDCLLVT IISLLPFKQS VQTSILARRW KNLCLETTNL VFKESEFVNL STDTETIKSK RSLFVSTMCQ WISSFTGEVI ESLEFSLSEP
101: VSFEKAIVSL TEFAASKQIK NITIDFSSPA SRKIDVIEHL VTLMHYQNTK FDITRIFFNL IHVRNLTICS FLIQMIQECE DPMEMHDAME ARHLVMKTNL
201: HANEFVGIKI FLNSCPELES LTFHMDATER IVRVSMPLDP KAFWLTNDTY ACLERTLKLV KIKNFRGGPN ELHVLKYLMR RGLVMEQLDL YEAKGLNDDQ
301: RRLVLTAAEE VQKNVERGSK HLRITLHKA

Best Arabidopsis Sequence Match ( AT2G17305.1 )
(BLAST)

001: MVEPDRVFFV RVMREWISRF TGKIIENFEI HLSQPMGFAG DIMSLTEFAT SRQVKNLVLD FSDPIQRNLS QAQQIIRDGL LRCRYPQKNE LDVSHLFFNL
101: LYVRNLTVCS FFLQVLQDCD DPMALHVSMK TRHLVMKTNM HANDFVGISI FLNSCPELES LTFDLVTSSR FVRAPSPLVI DPVSHWLTSK SYECLEKTLK
201: VVKITKFRGS SNELHMLQYL LRTGCVMERV DLYEAEGLNH NQKRWVLAGV EEVQQNFKRA SRHLRITLHN A

Arabidopsis Description

F-box/LRR protein [Source:UniProtKB/TrEMBL;Acc:Q3EBZ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.