Factsheet for Bra004102.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009781.1-P	Field mustard	plasma membrane	82.87	56.6
Bra039758.1-P	Field mustard	plasma membrane	81.62	55.74
Bra029003.1-P	Field mustard	cytosol, plasma membrane, plastid	78.19	53.29
AT3G29830.1	Thale cress	cytosol	43.61	30.17
AT1G56400.1	Thale cress	cytosol, endoplasmic reticulum, plastid	44.86	30.06
AT5G54820.1	Thale cress	plasma membrane	39.88	27.12
Bra014407.1-P	Field mustard	cytosol	37.07	25.54
KRH34702	Soybean	extracellular, plasma membrane	33.96	23.14
Bra011503.1-P	Field mustard	extracellular, plastid	21.81	20.9
Bra017630.1-P	Field mustard	extracellular	20.87	20.36
KRH73711	Soybean	plasma membrane	29.28	20.17
KRH73712	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	16.82	18.62
KRH46107	Soybean	endoplasmic reticulum, plasma membrane	29.59	18.03
KRH37978	Soybean	endoplasmic reticulum, plasma membrane	27.41	16.7
Bra004104.1-P	Field mustard	cytosol	0.31	0.71
CDY58678	Canola	cytosol	0.31	0.71

Protein Annotations

EnsemblPlants:Bra004102.1	EnsemblPlants:Bra004102.1-P	EnsemblPlantsGene:Bra004102	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR31639	PFAM:PF00646	PFscan:PS50181	SUPFAM:SSF81383	UniParc:UPI00025413FC	UniProt:M4CIR8
MapMan:35.1	:	:	:	:	:

Description

AT1G56400 (E=2e-072) | F-box family protein

Coordinates

chrA07:+:16863517..16864482

Molecular Weight (calculated)

36479.8 Da

IEP (calculated)

4.544

GRAVY (calculated)

0.008

Length

321 amino acids

Sequence
(BLAST)

001: MDSCDQPDII SNLPDVLLVL IISCLSFKEC VQTCALSKRW RSVYLETRNV SFKETDFLSP SVDANPIRNA LGRIVFVDYV CCWVARIHDH PIDTFEISVS
101: YPKTYLDLIE SLIAFAVRKK VKNLVLDFSN QAWRNFHDVN NQDLVVEIPQ SVYDLTSLES LKVAACMDFD PAKLSNLGKL KSVSFGWMEL KNPEPLLKTS
201: RIESLSMNEC WGLDFELVSG DMREVAIKNC DFFLNCTFDL PRVDILKYSG DILRFEFDKM NTIISEAEFD FRVLDSNKDE SNDPNTAEGG MLCHLLNNLL
301: DNGGRSATTL TVCPFLLKVC F

Best Arabidopsis Sequence Match ( AT1G56400.1 )
(BLAST)

001: MTFKRIASSI QQDRLSNLPD VLLIMIISCL SFKECIRTSV LAKRWRYLCR ETRNISFKET EYVDHFVSDK RSKRVSFAAY MCQWVSRYHG RYIETLEIYF
101: SIPSDFLAAV ESLIEFAVSR QVKNLVLDFS DPSWISTSCA SRYDYVCVQL PVCVYSLTTL ESLKIYSCGF DPSKFSNSRL PRKLSIGWIK LTDVESLLLN
201: SPTLKSLSIN YCWGIEIRNI AGDMKEFVFE SCDFSSFMVC CFDLPNVEIF KYSGQILSFD VKRMNMSIKD VILDFTAEGL YEDRNQRTKL EGSVLSAFLN
301: NLRGARTLSV CPYLLQTIQE CEDPFDLLRP METQHLVLRT RLHVMEFKGI KLLLDNCPNL ETLTFDIFSR SLFSYNKSYY GVGPRSYWKK NLTYKSLPKT
401: LKVVVVRNFT GRFGELNVLK FLIQSGRGRW PGREHGPMLE RVELYMDSSM AESQKELADD GAMMLQSISG DVQVLVYDP

Arabidopsis Description

Putative F-box/LRR-repeat protein At1g56400 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7X8]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.