Factsheet for Bra011503.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

plastid 4
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plastid
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75406	Canola	endoplasmic reticulum, plastid	99.4	99.4
Bra017630.1-P	Field mustard	extracellular	62.69	63.83
AT2G17305.1	Thale cress	cytosol	44.78	55.35
Bra004104.1-P	Field mustard	cytosol	16.12	38.57
Bra014407.1-P	Field mustard	cytosol	42.09	30.26
Bra039758.1-P	Field mustard	plasma membrane	39.1	27.87
Bra009781.1-P	Field mustard	plasma membrane	38.81	27.66
Bra029003.1-P	Field mustard	cytosol, plasma membrane, plastid	37.01	26.33
Bra004102.1-P	Field mustard	plasma membrane	20.9	21.81
KRH34702	Soybean	extracellular, plasma membrane	28.66	20.38
KRH73712	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.61	20.34
KRH73711	Soybean	plasma membrane	27.46	19.74
KRH46107	Soybean	endoplasmic reticulum, plasma membrane	27.76	17.65
KRH37978	Soybean	endoplasmic reticulum, plasma membrane	27.46	17.46

Protein Annotations

EnsemblPlants:Bra011503.1	EnsemblPlants:Bra011503.1-P	EnsemblPlantsGene:Bra011503	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	PANTHER:PTHR31639	PFAM:PF00646	PFAM:PF08387	PFscan:PS50181	SUPFAM:SSF81383
UniParc:UPI00025458CE	UniProt:M4D4U6	MapMan:35.1	:	:	:

Description

AT2G17305 (E=1e-078) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G54820.1); Has 41 Blast hits to 26 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA01:+:1916488..1918001

Molecular Weight (calculated)

38752.3 Da

IEP (calculated)

8.401

GRAVY (calculated)

-0.167

Length

335 amino acids

Sequence
(BLAST)

001: MDSGTKPNLL SNLPDCLLVL IISFLPFKQS VQTSVLAKRW KNLCRETTNL VFKESEFGLN QFVVDTEAKH SERRALFVSV MHQWISRFTG NTIETFELCL
101: PEPVGFEEDI MSLIEFAATK QTKNLVINLS SSNSRQPPGA LHIKLIYNQK NGLDITRLFS NLIYVRNLTI CPFLLEMMIQ DCDDPMKLHD PMKTRHLVIK
201: THMYPHEFGG ITIFLNSCPE LESLTFETYT TGPIVMSQRY WPLIHPKTFW LNNKTYECLE RTLKAVKVIN FCGIPNELHV LQYLIRTGRV MERLDLHAAK
301: TLNNEQRRLV LTAAEEFQKN VERGSRHLRV TLHNA

Best Arabidopsis Sequence Match ( AT2G17305.1 )
(BLAST)

001: MVEPDRVFFV RVMREWISRF TGKIIENFEI HLSQPMGFAG DIMSLTEFAT SRQVKNLVLD FSDPIQRNLS QAQQIIRDGL LRCRYPQKNE LDVSHLFFNL
101: LYVRNLTVCS FFLQVLQDCD DPMALHVSMK TRHLVMKTNM HANDFVGISI FLNSCPELES LTFDLVTSSR FVRAPSPLVI DPVSHWLTSK SYECLEKTLK
201: VVKITKFRGS SNELHMLQYL LRTGCVMERV DLYEAEGLNH NQKRWVLAGV EEVQQNFKRA SRHLRITLHN A

Arabidopsis Description

F-box/LRR protein [Source:UniProtKB/TrEMBL;Acc:Q3EBZ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.