Factsheet for Bra014407.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012213.1-P
Bra012214.1-P
Bra012216.1-P
Bra025795.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62230.1	Bra012213.1-P	AT1G20140.1	12169662
AT3G62230.1	Bra012214.1-P	AT1G20140.1	12169662
AT3G62230.1	Bra012216.1-P	AT1G20140.1	12169662
AT3G62230.1	Bra025795.1-P	AT1G20140.1	12169662

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66300	Canola	cytosol	96.35	96.35
AT3G62230.1	Thale cress	endoplasmic reticulum	44.85	45.34
Bra011503.1-P	Field mustard	extracellular, plastid	30.26	42.09
Bra017630.1-P	Field mustard	extracellular	27.25	38.6
Bra004104.1-P	Field mustard	cytosol	11.59	38.57
Bra039758.1-P	Field mustard	plasma membrane	38.2	37.87
Bra029003.1-P	Field mustard	cytosol, plasma membrane, plastid	37.98	37.58
Bra004102.1-P	Field mustard	plasma membrane	25.54	37.07
Bra009781.1-P	Field mustard	plasma membrane	36.48	36.17
KRH34702	Soybean	extracellular, plasma membrane	31.97	31.63
KRH73711	Soybean	plasma membrane	30.04	30.04
KRH73712	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.17	27.59
KRH46107	Soybean	endoplasmic reticulum, plasma membrane	30.04	26.57
KRH37978	Soybean	endoplasmic reticulum, plasma membrane	29.61	26.19

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlantsGene:Bra014407	EnsemblPlants:Bra014407.1	EnsemblPlants:Bra014407.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:FBD	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0007275	GO:GO:0008150	GO:GO:0009987	GO:GO:0030154	GO:GO:0048235	InterPro:IPR001810
InterPro:IPR032675	InterPro:LRR_dom_sf	UniProt:M4DD39	PFAM:PF08387	PFscan:PS50181	PANTHER:PTHR31639
SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000254382A	SEG:seg	:

Description

AT3G62230 (E=2e-109) | F-box family protein

Coordinates

chrA04:-:357073..358473

Molecular Weight (calculated)

52829.9 Da

IEP (calculated)

8.141

GRAVY (calculated)

-0.024

Length

466 amino acids

Sequence
(BLAST)

001: MDSRRNRDRL STLPEHILVP IISNLPFEDA VRTSVLSKPW KNLYHGTTNV SFKESEFVKR TVSSSEESSN EARAAFVRYV VNWASRFSGD VIQSFELRLS
101: KPFGFEAEIK HLIEFAVSKQ VKTLVLDLSE LSCDASNQAR LAAPFQLPEC VYNQTTIESL KLSACGFDPS RLANPCAFKS VCFGYTELGR IMTLLSKSPL
201: LESLTVRNCW NVNLESITGD QNRLRELVFE NCVFATEYTL LDLPNIKVFK YIGSFHYFQF LAVNRRMEEA YLAYGAETGD EIGQFFCDVL YDLLSARKLT
301: VCPFLIKAIK DSDDPVRLKA PMETRHLVIN TGLVPDEFVG IRLMINSCPE LEILTLQMFP SVPVARYTPG FNPMSYWAYQ ISHKCLKKTL KVVQVRNFTG
401: SMYELILLRY LIRSARVLER VDLYLPVGAS ESEKSSVRAI ISTLGDEGVA SSKVLRIRQL TGRINC

Best Arabidopsis Sequence Match ( AT3G62230.1 )
(BLAST)

001: MDSGSAVDII STLSDFLLVL IISNLSFKEA LSTSRLSTRW RHICRETRNI SFREDEIVTF ADDSVARYYQ RAALVAYMVG WVNNFTGGVV ESFELRLSNS
101: YAFEEGVTTL IEFAVSKNVK HLFLDLSEPR WVTNNDAAQL EPGLIKLPES FYKITSLVTL KLFGCRFEPS RLAKPGMVKT MFFRWIRLEM LSALIAKTPL
201: LEILNIKNCW EIGLDAITGY NDRLMKLVFK YCSFSAQQTT LDVPNIQIFK YFGKVYRFEF ASANKLMEEA YLDYREESRY NVSAGAIISG FLYSMLSAKT
301: FTICPYVLQL IQECEDPVRL KAPMETRQLV LKTNFEPNEF VGIRFMLNSS PYLETLSFQM VGPRPIEEMV PQIDPEAYWG QNTSHECLKK TLKKVEVWSF
401: YGGTHELRVL EYLIRYGRML ERVDLYQPIG LDDIQLLPIR AAADRVGEFE ARSENLVVTF Y

Arabidopsis Description

F-box protein At3g62230 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Q1]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.