Factsheet for Bra039758.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16441	Canola	plasma membrane	99.57	99.57
Bra004104.1-P	Field mustard	cytosol	27.66	92.86
Bra009781.1-P	Field mustard	plasma membrane	85.11	85.11
Bra029003.1-P	Field mustard	cytosol, plasma membrane, plastid	82.77	82.59
Bra004102.1-P	Field mustard	plasma membrane	55.74	81.62
AT1G56400.1	Thale cress	cytosol, endoplasmic reticulum, plastid	46.81	45.93
AT5G54820.1	Thale cress	plasma membrane	43.83	43.64
AT3G29830.1	Thale cress	cytosol	41.7	42.24
Bra011503.1-P	Field mustard	extracellular, plastid	27.87	39.1
Bra014407.1-P	Field mustard	cytosol	37.87	38.2
Bra017630.1-P	Field mustard	extracellular	25.32	36.17
KRH34702	Soybean	extracellular, plasma membrane	30.64	30.57
KRH73711	Soybean	plasma membrane	28.3	28.54
KRH73712	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	16.38	26.55
KRH46107	Soybean	endoplasmic reticulum, plasma membrane	28.3	25.24
KRH37978	Soybean	endoplasmic reticulum, plasma membrane	26.6	23.72

Protein Annotations

EnsemblPlants:Bra039758.1	EnsemblPlants:Bra039758.1-P	EnsemblPlantsGene:Bra039758	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31639	PFAM:PF00646	PFscan:PS50181
SEG:seg	SUPFAM:SSF81383	UniParc:UPI0002545B20	UniProt:M4FF86	MapMan:35.1	:

Description

AT1G56400 (E=4e-110) | F-box family protein

Coordinates

chrA02:-:9810202..9812509

Molecular Weight (calculated)

53789.2 Da

IEP (calculated)

5.671

GRAVY (calculated)

-0.040

Length

470 amino acids

Sequence
(BLAST)

001: MDSSDQADRI SNLPDVLLVL IVSCLSFKEC VQTCVLSKRW RSVYLETRNV SFKETDFLSP SVNANPIRNA LGRIVFVDYV RRWVARIHDQ PIDTFEISIS
101: YPKTYLYVIE SLIAFAVRKR VKNLVLDFSN PAWRTFHDVN LDELVVEIPE SVYDLATLES LKVCACNKFD PANLSNLGKL KTVSFGWMEL TDPEPFLTTS
201: RVESLTINDC WGLEFNMIKG NMREVAIINC EFLLNCIFDL PRVDILKYSG DIFPFEFDKM NTIISEVDLD FRVLDNNNDE SDDSNAEGGM LCHLLNNLLD
301: DGGRSATTLT VCPFLLKMIP RSEHPHFLRP METKHLVLKT ELHPREFNGI GLLLMNCPKL ETLTIDLLPP SPIAMASSYA GIDPQTYWMQ NISYECQRET
401: LKAVIVKNFI GGAKELHIVK FFIRSGCKRL ERVELYMPFD LDNGRKVFAY AKSEMLQKIS KHLQVVVHNS

Best Arabidopsis Sequence Match ( AT1G56400.1 )
(BLAST)

001: MTFKRIASSI QQDRLSNLPD VLLIMIISCL SFKECIRTSV LAKRWRYLCR ETRNISFKET EYVDHFVSDK RSKRVSFAAY MCQWVSRYHG RYIETLEIYF
101: SIPSDFLAAV ESLIEFAVSR QVKNLVLDFS DPSWISTSCA SRYDYVCVQL PVCVYSLTTL ESLKIYSCGF DPSKFSNSRL PRKLSIGWIK LTDVESLLLN
201: SPTLKSLSIN YCWGIEIRNI AGDMKEFVFE SCDFSSFMVC CFDLPNVEIF KYSGQILSFD VKRMNMSIKD VILDFTAEGL YEDRNQRTKL EGSVLSAFLN
301: NLRGARTLSV CPYLLQTIQE CEDPFDLLRP METQHLVLRT RLHVMEFKGI KLLLDNCPNL ETLTFDIFSR SLFSYNKSYY GVGPRSYWKK NLTYKSLPKT
401: LKVVVVRNFT GRFGELNVLK FLIQSGRGRW PGREHGPMLE RVELYMDSSM AESQKELADD GAMMLQSISG DVQVLVYDP

Arabidopsis Description

Putative F-box/LRR-repeat protein At1g56400 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7X8]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.