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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, peroxisome, plastid
BaCelLo:plastid
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:cytosol
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT5G54820.1 Thale cress plasma membrane 47.41 46.61
AT1G56400.1 Thale cress cytosol, endoplasmic reticulum, plastid 47.84 46.35
Bra004102.1-P Field mustard plasma membrane 30.17 43.61
CDY70831 Canola plasma membrane 34.91 43.2
CDY52573 Canola plasma membrane, vacuole 43.1 42.55
CDY07436 Canola plasma membrane 42.89 42.34
Bra029003.1-P Field mustard cytosol, plasma membrane, plastid 42.67 42.04
CDY16441 Canola plasma membrane 42.46 41.91
CDY16442 Canola plasma membrane 29.53 41.9
Bra009781.1-P Field mustard plasma membrane 42.24 41.7
Bra039758.1-P Field mustard plasma membrane 42.24 41.7
CDY61650 Canola plasma membrane 42.03 41.49
Bra004104.1-P Field mustard cytosol 12.07 40.0
AT2G17305.1 Thale cress cytosol 22.84 39.11
AT3G62230.1 Thale cress endoplasmic reticulum 36.64 36.88
CDY58678 Canola cytosol 10.99 36.43
KRH34702 Soybean extracellular, plasma membrane 30.39 29.94
KRH73712 Soybean cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 18.53 29.66
KRH73711 Soybean plasma membrane 28.23 28.11
KRH46107 Soybean endoplasmic reticulum, plasma membrane 27.59 24.29
KRH37978 Soybean endoplasmic reticulum, plasma membrane 27.16 23.91
Protein Annotations
Gene3D:3.80.10.10MapMan:35.1EntrezGene:822699ArrayExpress:AT3G29830EnsemblPlantsGene:AT3G29830RefSeq:AT3G29830
TAIR:AT3G29830RefSeq:AT3G29830-TAIR-GEnsemblPlants:AT3G29830.1TAIR:AT3G29830.1Unigene:At.53587InterPro:F-box-like_dom_sf
InterPro:F-box_domGO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:IPR001810InterPro:IPR032675
InterPro:LRR_dom_sfPFAM:PF00646PFscan:PS50181PANTHER:PTHR31639SUPFAM:SSF52058SUPFAM:SSF81383
UniParc:UPI00001635ED:::::
Description
F-box/RNI-like superfamily protein [Source:TAIR;Acc:AT3G29830]
Coordinates
chr3:+:11737049..11738847
Molecular Weight (calculated)
53799.6 Da
IEP (calculated)
5.656
GRAVY (calculated)
0.127
Length
464 amino acids
Sequence
(BLAST)
001: MDSVNQRDRI SSLPDVVLVM ILSFLSFKDN VKTSILSKRW RNICYEAKNI SFKESEYVDI SVFDYVSKRV SFVRYMLNWV SRVPIKVIES FEICLGFPVG
101: FEVEIKSLIE FSISRQVKKL VLDFSSPFWD NTWDGLRNDD FVIELPALIY GLQTLESLTI YACMFDPSRF TNVGLRTLSI GWFRLEKIES LLSKFPLLES
201: LSIISCYLDE VKLAGQIRVR ELIIDNCIIP TMYCLLNLPN IEIFKYSGNV IVFDFQKVNM ILLKEVYLDF FIEHENDEPT YSPKEAGDIL SHLLNDLRSS
301: RTLTVCSYLL EVISECNDPV DMLRDVQAQH LVLETLMHPN EFTGMRLLLD HCPNLETLTF QLLCLKPFPM ASHGGSSSHT LWLENISSRC LRRTLKILVV
401: RGFCNSWNEF YLLNYLVLPE HGFALERVEL YLPPLQEMPR QWAYHGAAML QKTSNRVQVI LHSA
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.