CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70831	Canola	plasma membrane	86.54	75.47
CDY16441	Canola	plasma membrane	91.74	63.83
CDY07436	Canola	plasma membrane	83.49	58.09
CDY52573	Canola	plasma membrane, vacuole	83.49	58.09
CDY61650	Canola	plasma membrane	83.18	57.87
CDX93985	Canola	cytosol, nucleus, plastid	9.79	38.55
AT1G56400.1	Thale cress	cytosol, endoplasmic reticulum, plastid	44.95	30.69
AT3G29830.1	Thale cress	cytosol	41.9	29.53
AT5G54820.1	Thale cress	plasma membrane	41.28	28.6
CDY66300	Canola	cytosol	36.7	25.75
KRH34702	Soybean	extracellular, plasma membrane	32.72	22.72
CDX69031	Canola	endoplasmic reticulum, plastid	21.71	21.26
CDX75406	Canola	endoplasmic reticulum, plastid	20.8	20.3
KRH73711	Soybean	plasma membrane	28.75	20.17
CDY49279	Canola	extracellular	19.88	19.76
KRH73712	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.43	19.66
CDX72454	Canola	extracellular	19.57	19.45
KRH46107	Soybean	endoplasmic reticulum, plasma membrane	29.66	18.41
CDX93984	Canola	cytosol, nucleus, plasma membrane, plastid	14.07	16.97
KRH37978	Soybean	endoplasmic reticulum, plasma membrane	27.22	16.89
CDY58678	Canola	cytosol	0.31	0.71

Protein Annotations

EnsemblPlants:CDY16442	EnsemblPlantsGene:GSBRNA2T00091001001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR31639
PFAM:PF00646	PFscan:PS50181	ProteinID:CDY16442	ProteinID:CDY16442.1	SEG:seg	SUPFAM:SSF81383
UniParc:UPI0004EEC056	UniProt:A0A078FUC2	MapMan:35.1	:	:	:

Description

BnaA02g12460DBnaA02g12460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FUC2]

Coordinates

chrLK032063:-:744263..748083

Molecular Weight (calculated)

37294.7 Da

IEP (calculated)

4.545

GRAVY (calculated)

0.007

Length

327 amino acids

Sequence
(BLAST)

001: MDSSDQADRI SNLPDVLLVL IVSCLSFKEC VQTCALSKRW RSVYLETRNV SFKETDFFSP SVNANPIRNA LGRIVFVDYV RRWVARIHDQ PIDTFEISIS
101: YPKTYLDVIE SLIAFAVRKR VKNLVLDFSN PAWRTFHDVN LDELVVEIPQ SVYDLATLES LKVGACKKFD PAKLSNLEKL KTVSFGWMEL TDPEPLLKTS
201: RVESLTINDC WELDFNTIKG NMREVAIINC DFLLNCIFDL PRVDILKYSG DLFPFEFDNM NTIISEVDFD FRVLDNNNDE SNDSNAEGGM LCHLLNNLLD
301: YGGRSATTLT VCPFLLKSVY ISTLCSI

Best Arabidopsis Sequence Match ( AT1G56400.1 )
(BLAST)

001: MTFKRIASSI QQDRLSNLPD VLLIMIISCL SFKECIRTSV LAKRWRYLCR ETRNISFKET EYVDHFVSDK RSKRVSFAAY MCQWVSRYHG RYIETLEIYF
101: SIPSDFLAAV ESLIEFAVSR QVKNLVLDFS DPSWISTSCA SRYDYVCVQL PVCVYSLTTL ESLKIYSCGF DPSKFSNSRL PRKLSIGWIK LTDVESLLLN
201: SPTLKSLSIN YCWGIEIRNI AGDMKEFVFE SCDFSSFMVC CFDLPNVEIF KYSGQILSFD VKRMNMSIKD VILDFTAEGL YEDRNQRTKL EGSVLSAFLN
301: NLRGARTLSV CPYLLQTIQE CEDPFDLLRP METQHLVLRT RLHVMEFKGI KLLLDNCPNL ETLTFDIFSR SLFSYNKSYY GVGPRSYWKK NLTYKSLPKT
401: LKVVVVRNFT GRFGELNVLK FLIQSGRGRW PGREHGPMLE RVELYMDSSM AESQKELADD GAMMLQSISG DVQVLVYDP

Arabidopsis Description

Putative F-box/LRR-repeat protein At1g56400 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7X8]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.