Factsheet for AT5G54820.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G56400.1	Thale cress	cytosol, endoplasmic reticulum, plastid	53.18	52.4
Bra004104.1-P	Field mustard	cytosol	15.04	50.71
AT3G29830.1	Thale cress	cytosol	46.61	47.41
Bra029003.1-P	Field mustard	cytosol, plasma membrane, plastid	45.76	45.86
CDY58678	Canola	cytosol	13.56	45.71
CDY52573	Canola	plasma membrane, vacuole	45.13	45.32
CDY61650	Canola	plasma membrane	44.07	44.26
CDY07436	Canola	plasma membrane	43.86	44.04
CDY16441	Canola	plasma membrane	43.86	44.04
Bra039758.1-P	Field mustard	plasma membrane	43.64	43.83
CDY70831	Canola	plasma membrane	34.32	43.2
Bra009781.1-P	Field mustard	plasma membrane	43.01	43.19
CDY16442	Canola	plasma membrane	28.6	41.28
Bra004102.1-P	Field mustard	plasma membrane	27.12	39.88
AT3G62230.1	Thale cress	endoplasmic reticulum	38.35	39.26
AT2G17305.1	Thale cress	cytosol	21.4	37.27
KRH73712	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	18.01	29.31
KRH34702	Soybean	extracellular, plasma membrane	29.24	29.3
KRH73711	Soybean	plasma membrane	27.75	28.11
KRH46107	Soybean	endoplasmic reticulum, plasma membrane	27.12	24.29
KRH37978	Soybean	endoplasmic reticulum, plasma membrane	26.69	23.91

Protein Annotations

MapMan:35.1	EntrezGene:835572	ProteinID:AED96544.1	ArrayExpress:AT5G54820	EnsemblPlantsGene:AT5G54820	RefSeq:AT5G54820
TAIR:AT5G54820	RefSeq:AT5G54820-TAIR-G	EnsemblPlants:AT5G54820.1	TAIR:AT5G54820.1	Unigene:At.55554	ProteinID:BAB08761.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001810	RefSeq:NP_200293.1	PFAM:PF00646	PFAM:PF08387	PFscan:PS50181	PANTHER:PTHR31639
PANTHER:PTHR31639:SF6	UniProt:Q9FFU7	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00000A0CB9	SEG:seg

Description

Putative F-box/LRR-repeat protein At5g54820 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFU7]

Coordinates

chr5:+:22269859..22271777

Molecular Weight (calculated)

54087.5 Da

IEP (calculated)

6.763

GRAVY (calculated)

-0.025

Length

472 amino acids

Sequence
(BLAST)

001: MDSIQQDRLS SLPDILLIMI ISFLPLKECV RTSVLSKRWR YLCLETTNLS FKESDYVNPD ITDAEYSRIV AYRSFFCSVD KWVSITQHQV VESFEICFSH
101: LVGFEDKIDA LIEYAVSTRV KNLVVDLSNP SWRSNGDISY RHFMYTLPKS VYSLTTLESL KIYGCKFDPS KFVNPVLLRS LSIGWVRLEN LHSLLSKSPS
201: LQSLSIKNCW GVDITSMAGQ FRELVIEHSD FSYMQCAFEL PRIHSFKYSG ELFEFYFDVV NVIIPNVYLD FGEERVYDLQ SQSSRISGEV ISRIINDLRA
301: AETLTVCPYI LQVIPECEKP SDLLQPMETR HLVLRTKMHT KEFNGIILLL NNCPNLETLG FDILTPCPFS ATSSDEGIDP KTYWMQKRTC KSLRKTLKVV
401: VIRNFCGSSN ELNVLRYLIR SASGAGDALE RVELYVPNGM EESQAMVVFA KAEMLQRTSK HVQVLCAQLL KK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.