Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49279 | Canola | extracellular | 54.98 | 45.29 |
| CDX72454 | Canola | extracellular | 54.61 | 44.98 |
| Bra011503.1-P | Field mustard | extracellular, plastid | 55.35 | 44.78 |
| CDX69031 | Canola | endoplasmic reticulum, plastid | 54.98 | 44.61 |
| CDX75406 | Canola | endoplasmic reticulum, plastid | 54.98 | 44.48 |
| Bra017630.1-P | Field mustard | extracellular | 53.87 | 44.38 |
| AT3G29830.1 | Thale cress | cytosol | 39.11 | 22.84 |
| AT1G56400.1 | Thale cress | cytosol, endoplasmic reticulum, plastid | 38.75 | 21.92 |
| AT3G62230.1 | Thale cress | endoplasmic reticulum | 36.9 | 21.69 |
| AT5G54820.1 | Thale cress | plasma membrane | 37.27 | 21.4 |
| KRH73711 | Soybean | plasma membrane | 30.63 | 17.81 |
| KRH34702 | Soybean | extracellular, plasma membrane | 28.78 | 16.56 |
| KRH37978 | Soybean | endoplasmic reticulum, plasma membrane | 29.15 | 14.99 |
| KRH46107 | Soybean | endoplasmic reticulum, plasma membrane | 28.78 | 14.8 |
| KRH73712 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 14.02 | 13.1 |
Protein Annotations
| ArrayExpress:AT2G17305 | EMBL:DQ446511 | EnsemblPlants:AT2G17305.1 | EnsemblPlantsGene:AT2G17305 | EntrezGene:816237 | GO:GO:0008150 |
| InterPro:FBD | PANTHER:PTHR31639 | PFAM:PF08387 | ProteinID:AEC06611.1 | RefSeq:AT2G17305 | RefSeq:AT2G17305-TAIR-G |
| RefSeq:NP_671861.2 | SMART:SM00579 | TAIR:AT2G17305 | TAIR:AT2G17305.1 | Unigene:At.52784 | UniParc:UPI0000D5BC66 |
| UniProt:Q3EBZ0 | MapMan:35.1 | : | : | : | : |
Description
F-box/LRR protein [Source:UniProtKB/TrEMBL;Acc:Q3EBZ0]
Coordinates
chr2:+:7527676..7529210
Molecular Weight (calculated)
31511.4 Da
IEP (calculated)
8.386
GRAVY (calculated)
-0.124
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MVEPDRVFFV RVMREWISRF TGKIIENFEI HLSQPMGFAG DIMSLTEFAT SRQVKNLVLD FSDPIQRNLS QAQQIIRDGL LRCRYPQKNE LDVSHLFFNL
101: LYVRNLTVCS FFLQVLQDCD DPMALHVSMK TRHLVMKTNM HANDFVGISI FLNSCPELES LTFDLVTSSR FVRAPSPLVI DPVSHWLTSK SYECLEKTLK
201: VVKITKFRGS SNELHMLQYL LRTGCVMERV DLYEAEGLNH NQKRWVLAGV EEVQQNFKRA SRHLRITLHN A
101: LYVRNLTVCS FFLQVLQDCD DPMALHVSMK TRHLVMKTNM HANDFVGISI FLNSCPELES LTFDLVTSSR FVRAPSPLVI DPVSHWLTSK SYECLEKTLK
201: VVKITKFRGS SNELHMLQYL LRTGCVMERV DLYEAEGLNH NQKRWVLAGV EEVQQNFKRA SRHLRITLHN A
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.