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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, plastid, cytosol

Predictor Summary:
  • plastid 3
  • endoplasmic reticulum 1
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, plastid
Any Predictor:cytosol, endoplasmic reticulum, plastid
BaCelLo:plastid
iPSORT:plastid
MultiLoc:endoplasmic reticulum
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT5G54820.1 Thale cress plasma membrane 52.4 53.18
AT3G29830.1 Thale cress cytosol 46.35 47.84
CDY70831 Canola plasma membrane 36.74 46.93
CDY16441 Canola plasma membrane 45.93 46.81
Bra039758.1-P Field mustard plasma membrane 45.93 46.81
Bra004104.1-P Field mustard cytosol 13.57 46.43
CDY52573 Canola plasma membrane, vacuole 45.3 46.17
CDY61650 Canola plasma membrane 45.3 46.17
CDY07436 Canola plasma membrane 44.89 45.74
Bra009781.1-P Field mustard plasma membrane 44.68 45.53
Bra029003.1-P Field mustard cytosol, plasma membrane, plastid 44.26 45.01
CDY16442 Canola plasma membrane 30.69 44.95
Bra004102.1-P Field mustard plasma membrane 30.06 44.86
CDY58678 Canola cytosol 12.32 42.14
AT2G17305.1 Thale cress cytosol 21.92 38.75
AT3G62230.1 Thale cress endoplasmic reticulum 36.33 37.74
KRH34702 Soybean extracellular, plasma membrane 28.39 28.87
KRH73711 Soybean plasma membrane 27.97 28.76
KRH73712 Soybean cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 17.33 28.62
KRH46107 Soybean endoplasmic reticulum, plasma membrane 26.93 24.48
KRH37978 Soybean endoplasmic reticulum, plasma membrane 26.1 23.72
Protein Annotations
Gene3D:3.80.10.10MapMan:35.1EntrezGene:842093ProteinID:AAG51499.1ProteinID:AEE33387.1ArrayExpress:AT1G56400
EnsemblPlantsGene:AT1G56400RefSeq:AT1G56400TAIR:AT1G56400RefSeq:AT1G56400-TAIR-GEnsemblPlants:AT1G56400.1TAIR:AT1G56400.1
Unigene:At.52230InterPro:F-box-like_dom_sfInterPro:F-box_domGO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR001810InterPro:IPR032675InterPro:LRR_dom_sfRefSeq:NP_176035.1PFAM:PF00646PFscan:PS50181
PANTHER:PTHR31639UniProt:Q9C7X8SUPFAM:SSF52047SUPFAM:SSF81383UniParc:UPI000009D22D:
Description
Putative F-box/LRR-repeat protein At1g56400 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7X8]
Coordinates
chr1:-:21111805..21113621
Molecular Weight (calculated)
55354.1 Da
IEP (calculated)
8.141
GRAVY (calculated)
-0.076
Length
479 amino acids
Sequence
(BLAST)
001: MTFKRIASSI QQDRLSNLPD VLLIMIISCL SFKECIRTSV LAKRWRYLCR ETRNISFKET EYVDHFVSDK RSKRVSFAAY MCQWVSRYHG RYIETLEIYF
101: SIPSDFLAAV ESLIEFAVSR QVKNLVLDFS DPSWISTSCA SRYDYVCVQL PVCVYSLTTL ESLKIYSCGF DPSKFSNSRL PRKLSIGWIK LTDVESLLLN
201: SPTLKSLSIN YCWGIEIRNI AGDMKEFVFE SCDFSSFMVC CFDLPNVEIF KYSGQILSFD VKRMNMSIKD VILDFTAEGL YEDRNQRTKL EGSVLSAFLN
301: NLRGARTLSV CPYLLQTIQE CEDPFDLLRP METQHLVLRT RLHVMEFKGI KLLLDNCPNL ETLTFDIFSR SLFSYNKSYY GVGPRSYWKK NLTYKSLPKT
401: LKVVVVRNFT GRFGELNVLK FLIQSGRGRW PGREHGPMLE RVELYMDSSM AESQKELADD GAMMLQSISG DVQVLVYDP
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.