Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039758.1-P | Field mustard | plasma membrane | 99.57 | 99.57 |
| CDY16442 | Canola | plasma membrane | 63.83 | 91.74 |
| CDY07436 | Canola | plasma membrane | 87.23 | 87.23 |
| CDY58678 | Canola | cytosol | 25.96 | 87.14 |
| CDY70831 | Canola | plasma membrane | 68.72 | 86.13 |
| CDY61650 | Canola | plasma membrane | 85.74 | 85.74 |
| CDY52573 | Canola | plasma membrane, vacuole | 85.11 | 85.11 |
| AT1G56400.1 | Thale cress | cytosol, endoplasmic reticulum, plastid | 46.81 | 45.93 |
| AT5G54820.1 | Thale cress | plasma membrane | 44.04 | 43.86 |
| AT3G29830.1 | Thale cress | cytosol | 41.91 | 42.46 |
| CDX93985 | Canola | cytosol, nucleus, plastid | 7.23 | 40.96 |
| CDX93984 | Canola | cytosol, nucleus, plasma membrane, plastid | 23.19 | 40.22 |
| CDX69031 | Canola | endoplasmic reticulum, plastid | 28.3 | 39.82 |
| CDY66300 | Canola | cytosol | 38.51 | 38.84 |
| CDX75406 | Canola | endoplasmic reticulum, plastid | 27.66 | 38.81 |
| CDY49279 | Canola | extracellular | 25.74 | 36.78 |
| CDX72454 | Canola | extracellular | 25.32 | 36.17 |
| KRH34702 | Soybean | extracellular, plasma membrane | 30.85 | 30.79 |
| KRH73711 | Soybean | plasma membrane | 28.3 | 28.54 |
| KRH73712 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 16.6 | 26.9 |
| KRH46107 | Soybean | endoplasmic reticulum, plasma membrane | 28.3 | 25.24 |
| KRH37978 | Soybean | endoplasmic reticulum, plasma membrane | 26.6 | 23.72 |
Protein Annotations
| EnsemblPlants:CDY16441 | EnsemblPlantsGene:GSBRNA2T00091000001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31639 | PFAM:PF00646 | PFscan:PS50181 | ProteinID:CDY16441 |
| ProteinID:CDY16441.1 | SEG:seg | SUPFAM:SSF81383 | UniParc:UPI0004EE0874 | UniProt:A0A078FTV2 | MapMan:35.1 |
Description
BnaA02g12450DBnaA02g12450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FTV2]
Coordinates
chrLK032063:-:741868..744194
Molecular Weight (calculated)
53840.3 Da
IEP (calculated)
5.673
GRAVY (calculated)
-0.053
Length
470 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSDQADRI SNLPDVLLVL IVSCLSFKEC VQTCVLSKRW RSVYLETRNV SFKETDFLSP SVNANPIRNA LGRIVFVDYV RRWVARIHDQ PIDTFEISIS
101: YPKTYLDVIE SLIAFAVRKR VKNLVLDFSN PAWRTFHDVN LDELVVEIPE SVYDLATLES LKVCACNKFD PANLSNLGKL KTVSFGWMEL TDPEPFLTTS
201: RVESLTINDC WGLEFNMIKG NMREVAIINC EFLLNCIFDL PRVDILKYSG DIFPFEFDKM NTIISEVDLD FRVLDNNNDE SDDSNAEGGM LCHLLNNLLD
301: DGGRSATTLT VCPFLLKMIP RSEHPHFLRP METKHLVLKT ELHPREFNGI RLLLMNCPKL ETLTIDLLPP SPIAMASSYA GIDPQTYWMQ NISYECQRET
401: LKAVIVKNFI GGAKELHIVK FFIRSGCKRL ERVELYMPFD LDNGRKVFAY AKSEMLQKIS KHLQVVVHNS
101: YPKTYLDVIE SLIAFAVRKR VKNLVLDFSN PAWRTFHDVN LDELVVEIPE SVYDLATLES LKVCACNKFD PANLSNLGKL KTVSFGWMEL TDPEPFLTTS
201: RVESLTINDC WGLEFNMIKG NMREVAIINC EFLLNCIFDL PRVDILKYSG DIFPFEFDKM NTIISEVDLD FRVLDNNNDE SDDSNAEGGM LCHLLNNLLD
301: DGGRSATTLT VCPFLLKMIP RSEHPHFLRP METKHLVLKT ELHPREFNGI RLLLMNCPKL ETLTIDLLPP SPIAMASSYA GIDPQTYWMQ NISYECQRET
401: LKAVIVKNFI GGAKELHIVK FFIRSGCKRL ERVELYMPFD LDNGRKVFAY AKSEMLQKIS KHLQVVVHNS
001: MTFKRIASSI QQDRLSNLPD VLLIMIISCL SFKECIRTSV LAKRWRYLCR ETRNISFKET EYVDHFVSDK RSKRVSFAAY MCQWVSRYHG RYIETLEIYF
101: SIPSDFLAAV ESLIEFAVSR QVKNLVLDFS DPSWISTSCA SRYDYVCVQL PVCVYSLTTL ESLKIYSCGF DPSKFSNSRL PRKLSIGWIK LTDVESLLLN
201: SPTLKSLSIN YCWGIEIRNI AGDMKEFVFE SCDFSSFMVC CFDLPNVEIF KYSGQILSFD VKRMNMSIKD VILDFTAEGL YEDRNQRTKL EGSVLSAFLN
301: NLRGARTLSV CPYLLQTIQE CEDPFDLLRP METQHLVLRT RLHVMEFKGI KLLLDNCPNL ETLTFDIFSR SLFSYNKSYY GVGPRSYWKK NLTYKSLPKT
401: LKVVVVRNFT GRFGELNVLK FLIQSGRGRW PGREHGPMLE RVELYMDSSM AESQKELADD GAMMLQSISG DVQVLVYDP
101: SIPSDFLAAV ESLIEFAVSR QVKNLVLDFS DPSWISTSCA SRYDYVCVQL PVCVYSLTTL ESLKIYSCGF DPSKFSNSRL PRKLSIGWIK LTDVESLLLN
201: SPTLKSLSIN YCWGIEIRNI AGDMKEFVFE SCDFSSFMVC CFDLPNVEIF KYSGQILSFD VKRMNMSIKD VILDFTAEGL YEDRNQRTKL EGSVLSAFLN
301: NLRGARTLSV CPYLLQTIQE CEDPFDLLRP METQHLVLRT RLHVMEFKGI KLLLDNCPNL ETLTFDIFSR SLFSYNKSYY GVGPRSYWKK NLTYKSLPKT
401: LKVVVVRNFT GRFGELNVLK FLIQSGRGRW PGREHGPMLE RVELYMDSSM AESQKELADD GAMMLQSISG DVQVLVYDP
Arabidopsis Description
Putative F-box/LRR-repeat protein At1g56400 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7X8]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.