CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY01389
CDY29370
CDY43408
CDY44209
CDY63159
CDY67544
CDY68971

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62230.1	CDY01389	AT1G20140.1	12169662
AT3G62230.1	CDY29370	AT1G20140.1	12169662
AT3G62230.1	CDY43408	AT1G20140.1	12169662
AT3G62230.1	CDY44209	AT1G20140.1	12169662
AT3G62230.1	CDY63159	AT1G20140.1	12169662
AT3G62230.1	CDY67544	AT1G20140.1	12169662
AT3G62230.1	CDY68971	AT1G20140.1	12169662

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66300	Canola	cytosol	91.57	16.31
CDX69031	Canola	endoplasmic reticulum, plastid	49.4	12.28
CDX75406	Canola	endoplasmic reticulum, plastid	49.4	12.24
CDX72454	Canola	extracellular	46.99	11.85
CDY49279	Canola	extracellular	46.99	11.85
CDY16442	Canola	plasma membrane	38.55	9.79
CDY70831	Canola	plasma membrane	39.76	8.8
CDY52573	Canola	plasma membrane, vacuole	44.58	7.87
AT3G62230.1	Thale cress	endoplasmic reticulum	42.17	7.59
KRH73712	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	25.3	7.24
CDY16441	Canola	plasma membrane	40.96	7.23
CDY61650	Canola	plasma membrane	40.96	7.23
CDY07436	Canola	plasma membrane	40.96	7.23
KRH34702	Soybean	extracellular, plasma membrane	36.14	6.37
KRH73711	Soybean	plasma membrane	32.53	5.79
KRH37978	Soybean	endoplasmic reticulum, plasma membrane	36.14	5.69
KRH46107	Soybean	endoplasmic reticulum, plasma membrane	33.73	5.31
CDX93984	Canola	cytosol, nucleus, plasma membrane, plastid	2.41	0.74
CDY58678	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX93985	EnsemblPlantsGene:GSBRNA2T00156843001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR31639
PANTHER:PTHR31639:SF6	PFscan:PS50181	ProteinID:CDX93985	ProteinID:CDX93985.1	SUPFAM:SSF81383	UniParc:UPI0004EE6B15
MapMan:35.2	:	:	:	:	:

Description

BnaC04g21440D

Coordinates

chrLK031878:-:1154147..1154657

Molecular Weight (calculated)

9516.2 Da

IEP (calculated)

10.222

GRAVY (calculated)

-0.586

Length

83 amino acids

Sequence
(BLAST)

1: MDSRRNRDRL STLPEHLLVP IISNLPFEEA VRTSVLAKPW KHLYHGTTNV SFKESEFVKR TVSSSEESLN EARAAYSRAI STR

Best Arabidopsis Sequence Match ( AT5G54820.1 )
(BLAST)

001: MDSIQQDRLS SLPDILLIMI ISFLPLKECV RTSVLSKRWR YLCLETTNLS FKESDYVNPD ITDAEYSRIV AYRSFFCSVD KWVSITQHQV VESFEICFSH
101: LVGFEDKIDA LIEYAVSTRV KNLVVDLSNP SWRSNGDISY RHFMYTLPKS VYSLTTLESL KIYGCKFDPS KFVNPVLLRS LSIGWVRLEN LHSLLSKSPS
201: LQSLSIKNCW GVDITSMAGQ FRELVIEHSD FSYMQCAFEL PRIHSFKYSG ELFEFYFDVV NVIIPNVYLD FGEERVYDLQ SQSSRISGEV ISRIINDLRA
301: AETLTVCPYI LQVIPECEKP SDLLQPMETR HLVLRTKMHT KEFNGIILLL NNCPNLETLG FDILTPCPFS ATSSDEGIDP KTYWMQKRTC KSLRKTLKVV
401: VIRNFCGSSN ELNVLRYLIR SASGAGDALE RVELYVPNGM EESQAMVVFA KAEMLQRTSK HVQVLCAQLL KK

Arabidopsis Description

Putative F-box/LRR-repeat protein At5g54820 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFU7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.