Factsheet for AT3G62230.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93984	Canola	cytosol, nucleus, plasma membrane, plastid	29.07	49.45
CDY66300	Canola	cytosol	46.42	45.92
Bra014407.1-P	Field mustard	cytosol	45.34	44.85
CDX93985	Canola	cytosol, nucleus, plastid	7.59	42.17
AT5G54820.1	Thale cress	plasma membrane	39.26	38.35
AT2G17305.1	Thale cress	cytosol	21.69	36.9
AT3G29830.1	Thale cress	cytosol	36.88	36.64
AT1G56400.1	Thale cress	cytosol, endoplasmic reticulum, plastid	37.74	36.33
KRH73712	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.14	27.24
KRH73711	Soybean	plasma membrane	27.11	26.82
KRH34702	Soybean	extracellular, plasma membrane	27.11	26.54
KRH46107	Soybean	endoplasmic reticulum, plasma membrane	27.11	23.72
KRH37978	Soybean	endoplasmic reticulum, plasma membrane	26.68	23.34

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EntrezGene:825396	ProteinID:AEE80325.1	EMBL:AK118317	EMBL:AK220964
ArrayExpress:AT3G62230	EnsemblPlantsGene:AT3G62230	RefSeq:AT3G62230	TAIR:AT3G62230	RefSeq:AT3G62230-TAIR-G	EnsemblPlants:AT3G62230.1
TAIR:AT3G62230.1	Unigene:At.34157	EMBL:BT005694	ProteinID:CAB71883.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0030154	GO:GO:0048235	InterPro:IPR001810
InterPro:IPR032675	InterPro:LRR_dom_sf	RefSeq:NP_191782.1	PFAM:PF00646	PO:PO:0000084	PO:PO:0001016
PO:PO:0001017	PO:PO:0001185	PO:PO:0007611	PO:PO:0007616	PO:PO:0009009	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0009066	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PANTHER:PTHR31639	UniProt:Q9M1Q1
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000000C6FF	:	:	:

Description

F-box protein At3g62230 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Q1]

Coordinates

chr3:+:23031531..23033146

Molecular Weight (calculated)

53145.4 Da

IEP (calculated)

5.616

GRAVY (calculated)

-0.019

Length

461 amino acids

Sequence
(BLAST)

001: MDSGSAVDII STLSDFLLVL IISNLSFKEA LSTSRLSTRW RHICRETRNI SFREDEIVTF ADDSVARYYQ RAALVAYMVG WVNNFTGGVV ESFELRLSNS
101: YAFEEGVTTL IEFAVSKNVK HLFLDLSEPR WVTNNDAAQL EPGLIKLPES FYKITSLVTL KLFGCRFEPS RLAKPGMVKT MFFRWIRLEM LSALIAKTPL
201: LEILNIKNCW EIGLDAITGY NDRLMKLVFK YCSFSAQQTT LDVPNIQIFK YFGKVYRFEF ASANKLMEEA YLDYREESRY NVSAGAIISG FLYSMLSAKT
301: FTICPYVLQL IQECEDPVRL KAPMETRQLV LKTNFEPNEF VGIRFMLNSS PYLETLSFQM VGPRPIEEMV PQIDPEAYWG QNTSHECLKK TLKKVEVWSF
401: YGGTHELRVL EYLIRYGRML ERVDLYQPIG LDDIQLLPIR AAADRVGEFE ARSENLVVTF Y

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.