Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 3
- golgi 3
- plasma membrane 4
- endoplasmic reticulum 3
- vacuole 3
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004104.1-P | Field mustard | cytosol | 29.57 | 99.29 |
| CDY61650 | Canola | plasma membrane | 94.47 | 94.47 |
| CDY58678 | Canola | cytosol | 26.81 | 90.0 |
| CDY16441 | Canola | plasma membrane | 87.23 | 87.23 |
| CDY70831 | Canola | plasma membrane | 68.51 | 85.87 |
| CDY16442 | Canola | plasma membrane | 58.09 | 83.49 |
| CDY52573 | Canola | plasma membrane, vacuole | 81.06 | 81.06 |
| AT1G56400.1 | Thale cress | cytosol, endoplasmic reticulum, plastid | 45.74 | 44.89 |
| AT5G54820.1 | Thale cress | plasma membrane | 44.04 | 43.86 |
| AT3G29830.1 | Thale cress | cytosol | 42.34 | 42.89 |
| CDX93985 | Canola | cytosol, nucleus, plastid | 7.23 | 40.96 |
| CDX93984 | Canola | cytosol, nucleus, plasma membrane, plastid | 22.77 | 39.48 |
| CDX69031 | Canola | endoplasmic reticulum, plastid | 27.87 | 39.22 |
| CDY66300 | Canola | cytosol | 38.09 | 38.41 |
| CDX75406 | Canola | endoplasmic reticulum, plastid | 27.23 | 38.21 |
| CDY49279 | Canola | extracellular | 26.17 | 37.39 |
| CDX72454 | Canola | extracellular | 25.74 | 36.78 |
| KRH34702 | Soybean | extracellular, plasma membrane | 29.79 | 29.72 |
| KRH73711 | Soybean | plasma membrane | 27.66 | 27.9 |
| KRH73712 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 15.96 | 25.86 |
| KRH46107 | Soybean | endoplasmic reticulum, plasma membrane | 26.81 | 23.91 |
| KRH37978 | Soybean | endoplasmic reticulum, plasma membrane | 25.53 | 22.77 |
Protein Annotations
| EnsemblPlants:CDY07436 | EnsemblPlantsGene:GSBRNA2T00124430001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31639 | PFAM:PF00646 | PFscan:PS50181 | ProteinID:CDY07436 |
| ProteinID:CDY07436.1 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0004EEA61B | UniProt:A0A078F228 | MapMan:35.1 |
Description
BnaA07g25150DBnaA07g25150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F228]
Coordinates
chrLK031978:+:721025..723323
Molecular Weight (calculated)
53769.1 Da
IEP (calculated)
6.063
GRAVY (calculated)
-0.106
Length
470 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSDQADRI SNLPDVLLVL IISCLSFKEC VQTCALSKRW RSVYLETRNV SFKETDFLSP SVDANPIRNA LGRIVFVDYV RCWVARIHDH PIDTFEISIS
101: YPKTYLDLIE SLIAFAVRKK VKNLVLDFSN QAWRNFHDVT NQDLVVEIPQ SVYDLTSLES LKVAACMDFD PAKLSNLGKL KSVSFGWMEL KNPEPLLKTS
201: RIESLSMNEC WGLDFELVSG DMREVAIKNC DFFLNCTFDL PRVDILKYSG DILRFEFDKM NTIISEVEFD FRVLDNNKDE SNDPNTAEGG MLCHLLNNLL
301: DNGGRSATTL TVCPFLLKMI PRSHPHLLHP METKHLVLKT ELHPREFNGI RLLLMNCPNL ETLTIDLLPP SPIAMASSYA GIDPQTYWMQ NISYECQRET
401: LKAVIMKNFI GGAKELHIVK FFIRSGCERL ERVELYMPFD LDNGRKVFAH AKSEMLQRSA NHLQVVVHNS
101: YPKTYLDLIE SLIAFAVRKK VKNLVLDFSN QAWRNFHDVT NQDLVVEIPQ SVYDLTSLES LKVAACMDFD PAKLSNLGKL KSVSFGWMEL KNPEPLLKTS
201: RIESLSMNEC WGLDFELVSG DMREVAIKNC DFFLNCTFDL PRVDILKYSG DILRFEFDKM NTIISEVEFD FRVLDNNKDE SNDPNTAEGG MLCHLLNNLL
301: DNGGRSATTL TVCPFLLKMI PRSHPHLLHP METKHLVLKT ELHPREFNGI RLLLMNCPNL ETLTIDLLPP SPIAMASSYA GIDPQTYWMQ NISYECQRET
401: LKAVIMKNFI GGAKELHIVK FFIRSGCERL ERVELYMPFD LDNGRKVFAH AKSEMLQRSA NHLQVVVHNS
001: MDSIQQDRLS SLPDILLIMI ISFLPLKECV RTSVLSKRWR YLCLETTNLS FKESDYVNPD ITDAEYSRIV AYRSFFCSVD KWVSITQHQV VESFEICFSH
101: LVGFEDKIDA LIEYAVSTRV KNLVVDLSNP SWRSNGDISY RHFMYTLPKS VYSLTTLESL KIYGCKFDPS KFVNPVLLRS LSIGWVRLEN LHSLLSKSPS
201: LQSLSIKNCW GVDITSMAGQ FRELVIEHSD FSYMQCAFEL PRIHSFKYSG ELFEFYFDVV NVIIPNVYLD FGEERVYDLQ SQSSRISGEV ISRIINDLRA
301: AETLTVCPYI LQVIPECEKP SDLLQPMETR HLVLRTKMHT KEFNGIILLL NNCPNLETLG FDILTPCPFS ATSSDEGIDP KTYWMQKRTC KSLRKTLKVV
401: VIRNFCGSSN ELNVLRYLIR SASGAGDALE RVELYVPNGM EESQAMVVFA KAEMLQRTSK HVQVLCAQLL KK
101: LVGFEDKIDA LIEYAVSTRV KNLVVDLSNP SWRSNGDISY RHFMYTLPKS VYSLTTLESL KIYGCKFDPS KFVNPVLLRS LSIGWVRLEN LHSLLSKSPS
201: LQSLSIKNCW GVDITSMAGQ FRELVIEHSD FSYMQCAFEL PRIHSFKYSG ELFEFYFDVV NVIIPNVYLD FGEERVYDLQ SQSSRISGEV ISRIINDLRA
301: AETLTVCPYI LQVIPECEKP SDLLQPMETR HLVLRTKMHT KEFNGIILLL NNCPNLETLG FDILTPCPFS ATSSDEGIDP KTYWMQKRTC KSLRKTLKVV
401: VIRNFCGSSN ELNVLRYLIR SASGAGDALE RVELYVPNGM EESQAMVVFA KAEMLQRTSK HVQVLCAQLL KK
Arabidopsis Description
Putative F-box/LRR-repeat protein At5g54820 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFU7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.