Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49279 | Canola | extracellular | 97.26 | 97.26 |
| CDX69031 | Canola | endoplasmic reticulum, plastid | 64.13 | 63.17 |
| CDX75406 | Canola | endoplasmic reticulum, plastid | 63.53 | 62.39 |
| AT2G17305.1 | Thale cress | cytosol | 44.98 | 54.61 |
| CDX93985 | Canola | cytosol, nucleus, plastid | 11.85 | 46.99 |
| CDY58678 | Canola | cytosol | 14.29 | 33.57 |
| CDY66300 | Canola | cytosol | 39.21 | 27.68 |
| CDX93984 | Canola | cytosol, nucleus, plasma membrane, plastid | 21.58 | 26.2 |
| CDY07436 | Canola | plasma membrane | 36.78 | 25.74 |
| CDY52573 | Canola | plasma membrane, vacuole | 36.47 | 25.53 |
| CDY61650 | Canola | plasma membrane | 36.47 | 25.53 |
| CDY16441 | Canola | plasma membrane | 36.17 | 25.32 |
| CDY70831 | Canola | plasma membrane | 27.36 | 24.0 |
| KRH73712 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 18.84 | 21.38 |
| KRH34702 | Soybean | extracellular, plasma membrane | 30.4 | 21.23 |
| KRH73711 | Soybean | plasma membrane | 29.79 | 21.03 |
| CDY16442 | Canola | plasma membrane | 19.45 | 19.57 |
| KRH46107 | Soybean | endoplasmic reticulum, plasma membrane | 29.79 | 18.6 |
| KRH37978 | Soybean | endoplasmic reticulum, plasma membrane | 29.48 | 18.41 |
Protein Annotations
| EnsemblPlants:CDX72454 | EnsemblPlantsGene:GSBRNA2T00099966001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | InterPro:FBD | InterPro:IPR001810 | PANTHER:PTHR31639 | PFAM:PF08387 | PFscan:PS50181 |
| ProteinID:CDX72454 | ProteinID:CDX72454.1 | SMART:SM00579 | SUPFAM:SSF81383 | UniParc:UPI0004EE0097 | MapMan:35.1 |
Description
BnaC07g44760D
Coordinates
chrLK031796:-:1328218..1329382
Molecular Weight (calculated)
37968.3 Da
IEP (calculated)
7.042
GRAVY (calculated)
-0.051
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSRRKSDLL SNLPDCLLVT IISLLPFKQS VQTSILARRW KNLCLETTNL VFKESEFVNL STDTETIKSK RSLFVSTMCQ WISSFTGEVI ESLEFSLSEP
101: VSFEKAIVSL TEFAASKQIK SITIDFSSPA SRKIDVIEHL VTLMHYQNTE FDITRIFFNL IHVRNLTICS FLIQMIQECE DPMEMHDAME ARHLVMRTNL
201: HANEFVGITI FLNSCPELES LTFHMDTTER IVRISMPLDP KVFWLTNDTY ECLERTLKLV KIKNFRGGSN ELHVLKYLIR RGLVMEQLDL YEAKGLNDDQ
301: RRLVLTAAEE VQKNVGRGSK HLRITLHKA
101: VSFEKAIVSL TEFAASKQIK SITIDFSSPA SRKIDVIEHL VTLMHYQNTE FDITRIFFNL IHVRNLTICS FLIQMIQECE DPMEMHDAME ARHLVMRTNL
201: HANEFVGITI FLNSCPELES LTFHMDTTER IVRISMPLDP KVFWLTNDTY ECLERTLKLV KIKNFRGGSN ELHVLKYLIR RGLVMEQLDL YEAKGLNDDQ
301: RRLVLTAAEE VQKNVGRGSK HLRITLHKA
001: MVEPDRVFFV RVMREWISRF TGKIIENFEI HLSQPMGFAG DIMSLTEFAT SRQVKNLVLD FSDPIQRNLS QAQQIIRDGL LRCRYPQKNE LDVSHLFFNL
101: LYVRNLTVCS FFLQVLQDCD DPMALHVSMK TRHLVMKTNM HANDFVGISI FLNSCPELES LTFDLVTSSR FVRAPSPLVI DPVSHWLTSK SYECLEKTLK
201: VVKITKFRGS SNELHMLQYL LRTGCVMERV DLYEAEGLNH NQKRWVLAGV EEVQQNFKRA SRHLRITLHN A
101: LYVRNLTVCS FFLQVLQDCD DPMALHVSMK TRHLVMKTNM HANDFVGISI FLNSCPELES LTFDLVTSSR FVRAPSPLVI DPVSHWLTSK SYECLEKTLK
201: VVKITKFRGS SNELHMLQYL LRTGCVMERV DLYEAEGLNH NQKRWVLAGV EEVQQNFKRA SRHLRITLHN A
Arabidopsis Description
F-box/LRR protein [Source:UniProtKB/TrEMBL;Acc:Q3EBZ0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.