CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G03030.1	Thale cress	cytosol	62.58	60.34
AT3G03040.1	Thale cress	cytosol	59.3	57.42
CDY49258	Canola	cytosol	53.61	51.36
CDX67770	Canola	cytosol	43.76	51.02
CDX84742	Canola	cytosol	50.77	50.99
CDX98338	Canola	cytosol	45.3	50.86
CDX98340	Canola	cytosol	24.29	50.68
CDY65604	Canola	cytosol	53.61	50.62
CDX67769	Canola	cytosol	46.17	50.6
CDX95484	Canola	cytosol	38.73	50.28
CDX98342	Canola	cytosol	43.33	50.25
CDX98339	Canola	cytosol, extracellular	44.86	50.0
CDY65456	Canola	peroxisome	52.95	49.69
CDY34798	Canola	peroxisome	49.89	49.67
CDX76838	Canola	cytosol	49.67	49.46
CDY29185	Canola	cytosol	46.17	49.41
CDX67768	Canola	cytosol	43.98	49.26
CDY00593	Canola	cytosol	38.73	47.97
CDY65605	Canola	cytosol	28.45	46.93
CDX98334	Canola	golgi, mitochondrion, plasma membrane	32.17	46.52
CDY67935	Canola	cytosol	44.86	46.28
CDY50412	Canola	cytosol, nucleus, peroxisome	42.23	43.57
CDX67786	Canola	cytosol	16.85	43.26
CDY18865	Canola	plastid	27.13	40.79
CDX89484	Canola	cytosol	53.83	39.61
CDY29195	Canola	cytosol	45.73	38.78
CDX98354	Canola	cytosol	35.67	38.26
CDY29197	Canola	cytosol	47.92	38.09
CDY29196	Canola	cytosol	45.51	37.82
CDX67783	Canola	cytosol	35.23	37.7
CDX98355	Canola	cytosol	34.79	37.68
CDY07822	Canola	cytosol	48.58	37.5
CDY07824	Canola	cytosol	44.64	37.23
CDX98353	Canola	cytosol	35.45	37.16
CDX67782	Canola	cytosol	35.23	36.93
CDY07837	Canola	cytosol	43.54	36.58
CDY57500	Canola	cytosol	36.32	35.02
CDY59410	Canola	cytosol	38.07	34.39
CDY33289	Canola	cytosol	37.64	33.99
CDX71909	Canola	cytosol	36.32	32.49
CDY06017	Canola	nucleus	39.82	31.43
CDX98357	Canola	cytosol	23.41	30.92
CDX67788	Canola	cytosol	21.88	30.86
CDX67785	Canola	cytosol	12.69	30.21
CDX89015	Canola	cytosol	31.29	30.17
CDY00610	Canola	mitochondrion	32.82	28.57
GSMUA_Achr2P13780_001	Banana	cytosol	21.01	23.36
CDY06019	Canola	cytosol	36.54	19.28
CDX67781	Canola	cytosol	32.6	19.03
CDX98352	Canola	cytosol, nucleus, plasma membrane	31.07	18.71

Protein Annotations

EnsemblPlants:CDY58541	EnsemblPlantsGene:GSBRNA2T00024828001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	PFAM:PF00646	ProteinID:CDY58541	ProteinID:CDY58541.1	SMART:SM00579
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EE7C97	UniProt:A0A078J3X7	MapMan:35.1	:

Description

BnaAnng15180DBnaAnng15180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J3X7]

Coordinates

chrLK033678:-:359..2582

Molecular Weight (calculated)

52478.8 Da

IEP (calculated)

4.987

GRAVY (calculated)

-0.096

Length

457 amino acids

Sequence
(BLAST)

001: MDLLSALPDD VRSHILSFLT TKEAALTSVL SKKWRYMFTR VPVLDVDDSD FLHPWIFMAF VDRVLSLQGD SPIERFTLKC EDGVDPERVN GWICNALRRG
101: VSELDLSINF EDEDYLLPRE MFVSKSLVKL KLTSEFGLHW CTGPDATFLP MLKTLHIASE MINMDCDVKM EKFLACFPVL EEAEMTSMDW IDPVDTVFSP
201: TLKKLTVHTT GMKTIQNPKS ISFDTPSLLF LAYSDYAAED YPLVKLNNVA VARIALSLTE DQTRRMRAPR KDLSEGDVVL QFGNAVKLMN GLQNVKELHL
301: HPDTLEVLSQ CCESMPVFNN LKMLIITSDE DRGWQAMPAL LRNCPQLEFL LIKGLVHHVT NQCGDACDCI HKKHKGRSLK SCPVKMFVIR GFTGTMKEIN
401: MIEHFLDYFP CLKEMNIYVE EDVPTPLKYD RRFTERVLEM IEEFDYSYNC SVQLLYE

Best Arabidopsis Sequence Match ( AT3G03030.1 )
(BLAST)

001: MDLVSSLPDD VRCHILSFLT TKESALTSVL SKKWRNLFTL VPNLDLDDSE YLHPEETKWE REEILDSFLD FVERVLSLQG NGPIRRFSLR CESGVPPARL
101: NRWLCKVLQR GVADLELIID FEDGYLLPRE LFVSETLVNL RLKSEFGCIH WWPGAEGTFL PRLQSLDISS AMVFCDDKLQ KLLPCFPVIE ELRLVGMEWI
201: DSHVTVSCAT LTNQLLLSST GSRTSKNPKS VSFDTPNLLS LAYSDLVAED YPLVNMKSLF KARIILGVDD DQIARMRAPT NYLSEDDVVR RFGNVVKLMK
301: GIQNVQQLHL HSDTLEVLSM CCESMPVFNN VKTLGIKSDY DRGWQAVPAL LRNCPHLETL TFEGLVHHVT DKCGDACDCI FRKDKGRSLK SCPVKVVEIK
401: EFRVTMKEMH LIEHFLDNFP CLKEMKIYRE EYDPSPFGND PQVDDLILDM IEEYKDIYSC NVQLLEPCDK WDEQ

Arabidopsis Description

F-box/LRR-repeat protein At3g03030 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8U4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.