Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67786 | Canola | cytosol | 39.57 | 93.82 |
| CDX67785 | Canola | cytosol | 42.42 | 93.23 |
| CDX98354 | Canola | cytosol | 86.26 | 85.45 |
| CDX67783 | Canola | cytosol | 85.78 | 84.78 |
| AT3G59250.1 | Thale cress | cytosol | 68.25 | 67.76 |
| CDX67782 | Canola | cytosol | 49.29 | 47.71 |
| CDX98353 | Canola | cytosol | 46.45 | 44.95 |
| CDX71909 | Canola | cytosol | 51.9 | 42.86 |
| CDY57500 | Canola | cytosol | 47.16 | 41.98 |
| CDX98357 | Canola | cytosol | 32.7 | 39.88 |
| CDX67788 | Canola | cytosol | 29.62 | 38.58 |
| CDY06017 | Canola | nucleus | 50.71 | 36.96 |
| CDY29185 | Canola | cytosol | 35.55 | 35.13 |
| CDY49258 | Canola | cytosol | 39.34 | 34.8 |
| CDY58541 | Canola | cytosol | 37.68 | 34.79 |
| CDY33289 | Canola | cytosol | 41.23 | 34.39 |
| CDY59410 | Canola | cytosol | 41.23 | 34.39 |
| CDX67768 | Canola | cytosol | 32.94 | 34.07 |
| CDX98338 | Canola | cytosol | 32.7 | 33.91 |
| CDX95484 | Canola | cytosol | 28.2 | 33.81 |
| CDX98342 | Canola | cytosol | 31.52 | 33.76 |
| CDY00593 | Canola | cytosol | 29.38 | 33.6 |
| CDX84742 | Canola | cytosol | 36.02 | 33.41 |
| CDX98340 | Canola | cytosol | 17.3 | 33.33 |
| CDX98334 | Canola | golgi, mitochondrion, plasma membrane | 24.88 | 33.23 |
| CDX67770 | Canola | cytosol | 30.81 | 33.16 |
| CDX76838 | Canola | cytosol | 36.02 | 33.12 |
| CDY65604 | Canola | cytosol | 37.91 | 33.06 |
| CDY67935 | Canola | cytosol | 34.6 | 32.96 |
| CDY65605 | Canola | cytosol | 21.56 | 32.85 |
| CDX98339 | Canola | cytosol, extracellular | 31.75 | 32.68 |
| CDY34798 | Canola | peroxisome | 35.55 | 32.68 |
| CDY65456 | Canola | peroxisome | 37.44 | 32.44 |
| CDX67769 | Canola | cytosol | 31.99 | 32.37 |
| CDY50412 | Canola | cytosol, nucleus, peroxisome | 33.65 | 32.05 |
| CDY18865 | Canola | plastid | 22.27 | 30.92 |
| CDX89015 | Canola | cytosol | 34.36 | 30.59 |
| CDY00610 | Canola | mitochondrion | 35.07 | 28.19 |
| CDY29195 | Canola | cytosol | 35.31 | 27.64 |
| CDY07822 | Canola | cytosol | 36.49 | 26.01 |
| CDY29196 | Canola | cytosol | 33.89 | 26.0 |
| CDY07837 | Canola | cytosol | 33.41 | 25.92 |
| CDY29197 | Canola | cytosol | 35.31 | 25.91 |
| CDX89484 | Canola | cytosol | 37.68 | 25.6 |
| CDY07824 | Canola | cytosol | 32.94 | 25.36 |
| CDY06019 | Canola | cytosol | 51.42 | 25.06 |
| CDX98352 | Canola | cytosol, nucleus, plasma membrane | 41.71 | 23.19 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 22.27 | 22.87 |
| CDX67781 | Canola | cytosol | 41.94 | 22.61 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EnsemblPlants:CDX98355 | ProteinID:CDX98355 | ProteinID:CDX98355.1 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00105909001 |
| InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 | PFAM:PF00646 | PFAM:PF07723 |
| PFAM:PF08387 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 |
| UniParc:UPI0004EF274D | : | : | : | : | : |
Description
BnaC06g17160D
Coordinates
chrLK031904:-:782658..784194
Molecular Weight (calculated)
47299.0 Da
IEP (calculated)
4.799
GRAVY (calculated)
0.072
Length
422 amino acids
Sequence
(BLAST)
(BLAST)
001: MISSKKMDRI SNLPEALISH ILSFLPTEES ALTSVLSKKW RYLFAYRPNL DFDGSFSLKC GHGVEPDCVT PWILNVLERG VSDLDLHVTL AGLCLPSKMF
101: MSKSLERLRI ESENVIGIDM EDVFLPKLKT LHINKVMLGK GGDFFEKVTS GCHVLEELIL IHVYSDFWIR SVSSKPLKRL ILSCIDCDKN PHSVSFDTPN
201: VVYLEYSDFV AGKYPKVKFD SLVEASVDLA MTSEQHEHAS YEHSVGDVTD FLMGIRSVQT LFASANTLEV LTFCCDHIPV FHNMFSLTIQ TCKSGWESLP
301: ALLKKCPNLE TLVFDGLSHT YTIKCEDVDG CLCKFSGEVP TCLSSSPVKV LQITGFGEAG VETETELIKY FLETMPQLEQ LIIYYDTLFD DDVIELSSEL
401: KRFPTKASPS CEIQVIFGDP SS
101: MSKSLERLRI ESENVIGIDM EDVFLPKLKT LHINKVMLGK GGDFFEKVTS GCHVLEELIL IHVYSDFWIR SVSSKPLKRL ILSCIDCDKN PHSVSFDTPN
201: VVYLEYSDFV AGKYPKVKFD SLVEASVDLA MTSEQHEHAS YEHSVGDVTD FLMGIRSVQT LFASANTLEV LTFCCDHIPV FHNMFSLTIQ TCKSGWESLP
301: ALLKKCPNLE TLVFDGLSHT YTIKCEDVDG CLCKFSGEVP TCLSSSPVKV LQITGFGEAG VETETELIKY FLETMPQLEQ LIIYYDTLFD DDVIELSSEL
401: KRFPTKASPS CEIQVIFGDP SS
001: MDIGPKDKIS NLPEALICHI LSFLPIEDSA LTSVLSKRWR YLFAFRPNLV FDDSVCLRPP CGHGVIPDYV TSWILNVLER GVLDLDLQVN VNGVRLPSKV
101: FVSKSLVRLR IESGNVRGID VDDVFLPKLK SLYLHTIMLG KGEDCFEKLT SGCHVLEELV LNNVYSNVWN RSVSSKTLKR LTLWCTESYD KNPHSVLFDT
201: PNLVYLKYSD YVAAKYPKVN FSSLVDATIG LAMTSDQDAN ASYDALVGNA TDFLMGICNV QILCLSANSL AVLTFCCESI PVFNNLIQLT IKTNQSVGWE
301: SLPALLKNCP ILETLVFEGL LHMYTIKCGD VDGCLCKYSG EVPSCLSSSP VKVLKILRFG EYGIVNQIEM IKIFLETMPH LEQLTVYYNT PIGGDLIEEV
401: SSQLKNFARE ASPNCEIQVI PDVLS
101: FVSKSLVRLR IESGNVRGID VDDVFLPKLK SLYLHTIMLG KGEDCFEKLT SGCHVLEELV LNNVYSNVWN RSVSSKTLKR LTLWCTESYD KNPHSVLFDT
201: PNLVYLKYSD YVAAKYPKVN FSSLVDATIG LAMTSDQDAN ASYDALVGNA TDFLMGICNV QILCLSANSL AVLTFCCESI PVFNNLIQLT IKTNQSVGWE
301: SLPALLKNCP ILETLVFEGL LHMYTIKCGD VDGCLCKYSG EVPSCLSSSP VKVLKILRFG EYGIVNQIEM IKIFLETMPH LEQLTVYYNT PIGGDLIEEV
401: SSQLKNFARE ASPNCEIQVI PDVLS
Arabidopsis Description
F-box/LRR-repeat protein At3g59250 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX46]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.