CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07824	Canola	cytosol	75.55	75.0
CDY29197	Canola	cytosol	77.02	72.87
CDY29196	Canola	cytosol	72.61	71.82
CDY07822	Canola	cytosol	76.84	70.61
CDY29185	Canola	cytosol	52.57	66.98
CDY29195	Canola	cytosol	65.44	66.05
AT3G58890.1	Thale cress	extracellular	28.86	53.58
CDY65604	Canola	cytosol	44.85	50.41
CDY49258	Canola	cytosol	43.57	49.69
AT3G58950.1	Thale cress	cytosol	36.58	47.72
CDY65605	Canola	cytosol	24.08	47.29
CDX98340	Canola	cytosol	18.93	47.03
CDY58541	Canola	cytosol	36.58	43.54
CDX84742	Canola	cytosol	35.29	42.2
CDX95484	Canola	cytosol	27.21	42.05
CDX76838	Canola	cytosol	35.29	41.83
CDY34798	Canola	peroxisome	34.93	41.39
CDX98342	Canola	cytosol	29.96	41.37
CDX98338	Canola	cytosol	30.33	40.54
CDX98334	Canola	golgi, mitochondrion, plasma membrane	23.35	40.19
CDX67768	Canola	cytosol	29.78	39.71
CDY65456	Canola	peroxisome	35.48	39.63
CDX67769	Canola	cytosol	30.33	39.57
CDY00593	Canola	cytosol	26.84	39.57
CDX67770	Canola	cytosol	28.49	39.54
CDX98339	Canola	cytosol, extracellular	29.23	38.78
CDY67935	Canola	cytosol	30.88	37.92
CDY18865	Canola	plastid	21.14	37.83
CDY50412	Canola	cytosol, nucleus, peroxisome	29.23	35.89
CDX67785	Canola	cytosol	12.5	35.42
CDX98355	Canola	cytosol	25.92	33.41
CDX67783	Canola	cytosol	25.74	32.79
CDX98354	Canola	cytosol	25.18	32.16
CDX89484	Canola	cytosol	36.03	31.56
CDX98353	Canola	cytosol	24.82	30.96
CDX67782	Canola	cytosol	24.63	30.73
CDY57500	Canola	cytosol	25.74	29.54
CDX67786	Canola	cytosol	9.38	28.65
CDY33289	Canola	cytosol	25.55	27.47
CDY59410	Canola	cytosol	25.55	27.47
CDY06017	Canola	nucleus	28.68	26.94
CDX71909	Canola	cytosol	24.45	26.03
CDX89015	Canola	cytosol	22.61	25.95
CDX67788	Canola	cytosol	14.89	25.0
CDX98357	Canola	cytosol	15.44	24.28
CDY00610	Canola	mitochondrion	22.24	23.05
GSMUA_Achr2P13780_001	Banana	cytosol	13.79	18.25
CDX98352	Canola	cytosol, nucleus, plasma membrane	25.18	18.05
CDX67781	Canola	cytosol	25.74	17.88
CDY06019	Canola	cytosol	24.45	15.36

Protein Annotations

EnsemblPlants:CDY07837	EnsemblPlantsGene:GSBRNA2T00124985001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:FBD	InterPro:IPR001810	ncoils:Coil	PANTHER:PTHR31639	PANTHER:PTHR31639:SF6
PFAM:PF00646	PFAM:PF08387	ProteinID:CDY07837	ProteinID:CDY07837.1	SEG:seg	SMART:SM00579
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EF2BAF	UniProt:A0A078F424	MapMan:35.1	:

Description

BnaC03g47850DBnaC03g47850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F424]

Coordinates

chrLK031981:-:312118..314134

Molecular Weight (calculated)

62217.9 Da

IEP (calculated)

4.685

GRAVY (calculated)

-0.368

Length

544 amino acids

Sequence
(BLAST)

001: MDRIGSLPDD VICHILSFLT TKEAAFTSIL SKRWRNKFSL KCKTGIDIDR VNQWILELVL DFPRHGDDNY MYLLPVEMFV STKLVELKLR SKFGVDWWRG
101: GTNTFLPMLK TLTFDSKWIL LCDDLKWPDS DESVSSESLR KLTIYAGGFE DFQNPMSISF DTPNLVYLDY SDFVAADYPK VDLIRAPDDE DDVSLRLRNV
201: WKLISGLRNV NTLFISAETL EVMSLCCESM PVFNNLKFLG IISAEDLGWQ AMPVLLRNCP HLETLILKGL LHHVTDKCGD VCDCISREDK GHSLSSCPVK
301: KLQIRGFKGT VREKEMIRHF LESFPCLDEM EVYADESDND DPTNVEVNRI YKIIAYKVHA EEVSTETVPQ SKSMSQSQME EISSQFTPRN NRNKYDFVYI
401: LHGAPPPPPP QDMSEHYYLK EQLDAAKSKL AKLNEFLKEL LQVPDAIAIY DRIVDQNTMI ASALKARQSA AESEASNDQE KNRDFEALFE IIADLYPDFA
501: SAWKDRRGTD LERGETSRDQ REMAELDQTT STAVAADLFP RDGH

Best Arabidopsis Sequence Match ( AT3G58930.1 )
(BLAST)

001: MDRVSNLPDG VRGHILSFLP AKHIALTSVL SKSWLNLWKL IPILDIDDSE FLHPEEGKAE RLEIRQSFVD FVDRVLALQD DSPIDRFSLK CITGIHPDHV
101: NRWICNVLQR GVSDLDLFID FSYEDTQEDE DMLPQEMFVS KTLVKLKIRN DRCVDWWCGK GGTSLPMLKS LYIDSDLILW GKMKRFLSSF PVLEELRMAS
201: MEWKESHETV SSASLRKLSI LGTGCEDYVN PKSISFDTPS LLYLNYSDLV AEDYPLVNMG KLLEARINLI VKDDQIKRVR EPNNDLLQDD AGNVVLQFGN
301: VVKLMNGIQN IQILYLTADT LEVLSLCCES MPVFNNLKTL GIKSEEGRGW QAVPALLRNC PHLEYLIIEG LLHNVTDKCG DACDCISRED KGRSLASCPV
401: KKVEIQGFRG TMREINMIGH FLRSFKCLKE MGIFPEEEGP TNFENPGAFE YVEKILKLYN EISNCDVYFL VWGYMRRKWT TQ

Arabidopsis Description

F-box/LRR-repeat protein At3g58930 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXW6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.