CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65604	Canola	cytosol	90.36	89.05
AT3G58950.1	Thale cress	cytosol	52.41	59.95
CDY29185	Canola	cytosol	52.83	59.02
AT3G58890.1	Thale cress	extracellular	33.75	54.95
CDX84742	Canola	cytosol	52.41	54.95
CDY58541	Canola	cytosol	51.36	53.61
CDY65456	Canola	peroxisome	54.09	52.98
CDX76838	Canola	cytosol	50.94	52.94
CDY34798	Canola	peroxisome	50.73	52.72
CDX98338	Canola	cytosol	44.86	52.58
CDX98342	Canola	cytosol	42.35	51.27
CDY50412	Canola	cytosol, nucleus, peroxisome	47.59	51.24
CDX98339	Canola	cytosol, extracellular	43.82	50.98
CDX67769	Canola	cytosol	44.03	50.36
CDX67768	Canola	cytosol	42.77	50.0
CDY29195	Canola	cytosol	56.18	49.72
CDX67770	Canola	cytosol	40.25	48.98
CDX95484	Canola	cytosol	36.06	48.86
CDY65605	Canola	cytosol	27.67	47.65
CDX98340	Canola	cytosol	21.8	47.49
CDY00593	Canola	cytosol	36.27	46.88
CDY67935	Canola	cytosol	42.98	46.28
CDY29196	Canola	cytosol	52.83	45.82
CDY29197	Canola	cytosol	54.93	45.57
CDX98334	Canola	golgi, mitochondrion, plasma membrane	29.98	45.25
CDY07822	Canola	cytosol	54.93	44.26
CDY07824	Canola	cytosol	50.73	44.16
CDY07837	Canola	cytosol	49.69	43.57
CDX67786	Canola	cytosol	16.14	43.26
CDX89484	Canola	cytosol	53.67	41.22
CDY18865	Canola	plastid	26.21	41.12
CDX98355	Canola	cytosol	34.8	39.34
CDX98353	Canola	cytosol	35.01	38.3
CDX67783	Canola	cytosol	34.17	38.17
CDX67782	Canola	cytosol	34.8	38.07
CDX98354	Canola	cytosol	33.75	37.79
CDY57500	Canola	cytosol	35.64	35.87
CDY59410	Canola	cytosol	37.11	34.98
CDY33289	Canola	cytosol	36.9	34.78
CDX71909	Canola	cytosol	35.43	33.07
CDX67785	Canola	cytosol	13.21	32.81
CDX89015	Canola	cytosol	32.49	32.7
CDX67788	Canola	cytosol	21.59	31.79
CDX98357	Canola	cytosol	22.85	31.5
CDY06017	Canola	nucleus	38.16	31.43
CDY00610	Canola	mitochondrion	33.54	30.48
GSMUA_Achr2P13780_001	Banana	cytosol	20.96	24.33
CDX67781	Canola	cytosol	32.7	19.92
CDX98352	Canola	cytosol, nucleus, plasma membrane	31.66	19.89
CDY06019	Canola	cytosol	35.22	19.4

Protein Annotations

EnsemblPlants:CDY49258	EnsemblPlantsGene:GSBRNA2T00092651001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	InterPro:IPR001810	PANTHER:PTHR31639	PANTHER:PTHR31639:SF6
PFAM:PF00646	PFscan:PS50181	ProteinID:CDY49258	ProteinID:CDY49258.1	SEG:seg	SMART:SM00579
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EF294A	UniProt:A0A078IJK4	MapMan:35.1	:

Description

BnaA09g55370DBnaA09g55370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJK4]

Coordinates

chrLK032820:+:113648..115749

Molecular Weight (calculated)

54205.6 Da

IEP (calculated)

4.575

GRAVY (calculated)

-0.042

Length

477 amino acids

Sequence
(BLAST)

001: MDLVSSLPEE VLCHILSFMS TKEAALTSVL SKRWLSLWTL VPNLDVDDSV FLHPEEGKRE REGILYSFMD FVDRVLALQG DSPIKRFSLK CKTGIDPDRV
101: NLWILNVLQR GVSDLELCLD FPRCGYSDND DEDYELPKEM FESKTLVDLK LTSEFGVDWW RDKGTLLPML KSLRIDSGEL LLLSDELELF VYALPVLEEL
201: YLATMEWFDL DETVSSASLR KLTIYAKGFE GFGGDPKGFS FDTPSLVYLD YSDYVAADYP KVNLTSLAEA RLNLLVKENQ VELIRAAAPN GEDDVVIQRF
301: RNVSKLMRGL INVEKLSLSA DTLEVLSLSC DSMPVFNNLK SLNIKSHKER GWQAVPVLLR NCPHLETIVF EGLIHYVTDD CGDACGCISR EDKGRCSLVS
401: CPVKKIQIHG FEMTVPEMKV IRHFLVSLQC LKEMKIYAKE NDPTNLLLPA MFELIEMAMK FYSQEFKCDV SFIRPGS

Best Arabidopsis Sequence Match ( AT3G03030.1 )
(BLAST)

001: MDLVSSLPDD VRCHILSFLT TKESALTSVL SKKWRNLFTL VPNLDLDDSE YLHPEETKWE REEILDSFLD FVERVLSLQG NGPIRRFSLR CESGVPPARL
101: NRWLCKVLQR GVADLELIID FEDGYLLPRE LFVSETLVNL RLKSEFGCIH WWPGAEGTFL PRLQSLDISS AMVFCDDKLQ KLLPCFPVIE ELRLVGMEWI
201: DSHVTVSCAT LTNQLLLSST GSRTSKNPKS VSFDTPNLLS LAYSDLVAED YPLVNMKSLF KARIILGVDD DQIARMRAPT NYLSEDDVVR RFGNVVKLMK
301: GIQNVQQLHL HSDTLEVLSM CCESMPVFNN VKTLGIKSDY DRGWQAVPAL LRNCPHLETL TFEGLVHHVT DKCGDACDCI FRKDKGRSLK SCPVKVVEIK
401: EFRVTMKEMH LIEHFLDNFP CLKEMKIYRE EYDPSPFGND PQVDDLILDM IEEYKDIYSC NVQLLEPCDK WDEQ

Arabidopsis Description

F-box/LRR-repeat protein At3g03030 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8U4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.