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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY34798 Canola peroxisome 96.08 96.08
CDX84742 Canola cytosol 84.75 85.49
CDY65456 Canola peroxisome 86.49 81.52
AT3G58930.1 Thale cress cytosol 63.18 60.17
CDY49258 Canola cytosol 52.94 50.94
CDX89484 Canola cytosol 68.63 50.72
CDY65604 Canola cytosol 52.51 49.79
CDY58541 Canola cytosol 49.46 49.67
CDY29185 Canola cytosol 45.32 48.71
CDX98338 Canola cytosol 42.7 48.16
CDX95484 Canola cytosol 36.17 47.16
CDX98342 Canola cytosol 40.09 46.7
CDX67770 Canola cytosol 39.87 46.68
CDX98339 Canola cytosol, extracellular 41.61 46.59
CDX67769 Canola cytosol 42.05 46.28
AT3G58940.1 Thale cress cytosol 62.09 46.12
CDX67768 Canola cytosol 40.74 45.83
CDY00593 Canola cytosol 36.6 45.53
CDY65605 Canola cytosol 26.8 44.4
CDX98340 Canola cytosol 20.91 43.84
CDX98334 Canola golgi, mitochondrion, plasma membrane 29.41 42.72
CDY67935 Canola cytosol 41.18 42.66
CDY50412 Canola cytosol, nucleus, peroxisome 41.18 42.66
CDY18865 Canola plastid 26.36 39.8
CDX67786 Canola cytosol 14.81 38.2
CDY29196 Canola cytosol 45.32 37.82
CDY07824 Canola cytosol 44.88 37.59
CDY29195 Canola cytosol 43.79 37.29
CDY29197 Canola cytosol 45.75 36.52
CDX67783 Canola cytosol 33.77 36.3
CDX98355 Canola cytosol 33.12 36.02
CDX98354 Canola cytosol 33.33 35.92
CDX98353 Canola cytosol 33.77 35.55
CDX67782 Canola cytosol 33.55 35.32
CDY07837 Canola cytosol 41.83 35.29
CDY07822 Canola cytosol 44.66 34.63
CDX67785 Canola cytosol 14.38 34.38
CDX67788 Canola cytosol 23.97 33.95
CDX98357 Canola cytosol 24.84 32.95
CDY57500 Canola cytosol 33.77 32.7
CDY59410 Canola cytosol 35.08 31.82
CDY33289 Canola cytosol 34.86 31.62
CDX71909 Canola cytosol 33.12 29.75
CDX89015 Canola cytosol 30.07 29.11
CDY06017 Canola nucleus 35.73 28.32
CDY00610 Canola mitochondrion 29.41 25.71
GSMUA_Achr2P13780_001 Banana cytosol 18.52 20.68
CDX98352 Canola cytosol, nucleus, plasma membrane 29.19 17.65
CDY06019 Canola cytosol 33.12 17.55
CDX67781 Canola cytosol 29.63 17.37
Protein Annotations
Gene3D:3.80.10.10MapMan:35.1EnsemblPlants:CDX76838ProteinID:CDX76838ProteinID:CDX76838.1InterPro:F-box-like_dom_sf
InterPro:F-box_domInterPro:FBDGO:GO:0003674GO:GO:0005488GO:GO:0005515EnsemblPlantsGene:GSBRNA2T00127345001
InterPro:IPR001810InterPro:IPR032675InterPro:LRR_dom_sfPFAM:PF00646PFscan:PS50181PANTHER:PTHR31639
PANTHER:PTHR31639:SF6SMART:SM00256SMART:SM00579SUPFAM:SSF52047SUPFAM:SSF81383UniParc:UPI0004EF46AA
SEG:seg:::::
Description
BnaC08g34240D
Coordinates
chrLK031808:+:1360418..1362049
Molecular Weight (calculated)
52289.7 Da
IEP (calculated)
4.839
GRAVY (calculated)
-0.168
Length
459 amino acids
Sequence
(BLAST)
001: MDRLSSLPDE LLYHILSLLP TKSSVVTSSL SKRWLNLWKL NPNLDIDDSV FIHPQDGKGE RQHIRQSFVR FVDSVLAMQG DSPINTFSLK CITGIHPDTV
101: NRWICNVLQR GVSDLSLFTD FTCEDTEEDS YQLPRELFLS RTLVKLKLRS EHCVDWWWPG GIWSDSLALA MLKSLSIDSD LIFCGEVEEF IPSFTALEEL
201: RMGSMEWRES DVTVSSSTLR TLSLHGTGCE EFVNPTSVSF DTPNLRVLSY YDLVAEDYPL DDDEGNVFVN FGNVVKLMNG IQNVQKLSFT ADTLEVLSQC
301: CDTMPVFNNL KFLGITSEEG RGWQAMPALL KNCPRLETII LEGLLHYETD KCGDACPCIS REGRGRSLRA CPVNRLEIQG FRATMKEMTM IKHFLDYFPG
401: LKRLDVVIED NEPTQLRNPE LSKCVKEMFN LYSRLFPSCS VELMVSGFLQ KKWRAQGHI
Best Arabidopsis Sequence Match ( AT3G58940.2 )
(BLAST)
001: MDRVSNLPEE VRCHILSFLP TKHAALTSVL SKSWLNLWKF ETNLDIDDSD FLHPEEGKAE RDEIRQSFVE FVDGVLALQG DSPIEKFSLK CITGIHPDHV
101: NRWICNVLQR GVSDLYLFTD FSDEDTEEDG GYRLPQEMFV SRTLVKLKLR SEHCVNWWHW DIGASLPNLK SLNIDSDLIF FGEMEKFLSS FPVLEEVHMA
201: NMEWRELDET MSSASLTKLS IHGTGVEEFE HPKSISIDTP NLLYLNYSDL VAEDYPLDDE GDVVLQFCNV VKLINGIQNI QTLYLTEDTL EVLTMCCESM
301: PVFNNLKTLG LKSDEGRGWQ AVPALLRNCP HLEFLIIEGL LHSVTDKCGD ACDCISREDK GRSLISCPVK KLEVRGFRGT IREKEMIRHF LEYFPCLDEM
401: EIDAEENDST NFEVPRILKV VAYRLHDVVS TEIVGHWQSS AQSGGWSQTQ MDEMYYELAP RNKERIYDMF FFMRRASSTV PPPPPQEMSQ DYLQMQLEVA
501: DLKERQRDQE AKLADLKERL RAMLDMIVDQ NPIIASALRA REATNSEREK ASSGQEMTEK ERDYDALFDI IVEQNPMLAS AVRALRATDS ERAETSSNQE
601: MTELGQATAT YFPPREGE
Arabidopsis Description
F-box/LRR-repeat protein At3g58940 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXQ8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.