Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY34798 | Canola | peroxisome | 96.08 | 96.08 |
CDX84742 | Canola | cytosol | 84.75 | 85.49 |
CDY65456 | Canola | peroxisome | 86.49 | 81.52 |
AT3G58930.1 | Thale cress | cytosol | 63.18 | 60.17 |
CDY49258 | Canola | cytosol | 52.94 | 50.94 |
CDX89484 | Canola | cytosol | 68.63 | 50.72 |
CDY65604 | Canola | cytosol | 52.51 | 49.79 |
CDY58541 | Canola | cytosol | 49.46 | 49.67 |
CDY29185 | Canola | cytosol | 45.32 | 48.71 |
CDX98338 | Canola | cytosol | 42.7 | 48.16 |
CDX95484 | Canola | cytosol | 36.17 | 47.16 |
CDX98342 | Canola | cytosol | 40.09 | 46.7 |
CDX67770 | Canola | cytosol | 39.87 | 46.68 |
CDX98339 | Canola | cytosol, extracellular | 41.61 | 46.59 |
CDX67769 | Canola | cytosol | 42.05 | 46.28 |
AT3G58940.1 | Thale cress | cytosol | 62.09 | 46.12 |
CDX67768 | Canola | cytosol | 40.74 | 45.83 |
CDY00593 | Canola | cytosol | 36.6 | 45.53 |
CDY65605 | Canola | cytosol | 26.8 | 44.4 |
CDX98340 | Canola | cytosol | 20.91 | 43.84 |
CDX98334 | Canola | golgi, mitochondrion, plasma membrane | 29.41 | 42.72 |
CDY67935 | Canola | cytosol | 41.18 | 42.66 |
CDY50412 | Canola | cytosol, nucleus, peroxisome | 41.18 | 42.66 |
CDY18865 | Canola | plastid | 26.36 | 39.8 |
CDX67786 | Canola | cytosol | 14.81 | 38.2 |
CDY29196 | Canola | cytosol | 45.32 | 37.82 |
CDY07824 | Canola | cytosol | 44.88 | 37.59 |
CDY29195 | Canola | cytosol | 43.79 | 37.29 |
CDY29197 | Canola | cytosol | 45.75 | 36.52 |
CDX67783 | Canola | cytosol | 33.77 | 36.3 |
CDX98355 | Canola | cytosol | 33.12 | 36.02 |
CDX98354 | Canola | cytosol | 33.33 | 35.92 |
CDX98353 | Canola | cytosol | 33.77 | 35.55 |
CDX67782 | Canola | cytosol | 33.55 | 35.32 |
CDY07837 | Canola | cytosol | 41.83 | 35.29 |
CDY07822 | Canola | cytosol | 44.66 | 34.63 |
CDX67785 | Canola | cytosol | 14.38 | 34.38 |
CDX67788 | Canola | cytosol | 23.97 | 33.95 |
CDX98357 | Canola | cytosol | 24.84 | 32.95 |
CDY57500 | Canola | cytosol | 33.77 | 32.7 |
CDY59410 | Canola | cytosol | 35.08 | 31.82 |
CDY33289 | Canola | cytosol | 34.86 | 31.62 |
CDX71909 | Canola | cytosol | 33.12 | 29.75 |
CDX89015 | Canola | cytosol | 30.07 | 29.11 |
CDY06017 | Canola | nucleus | 35.73 | 28.32 |
CDY00610 | Canola | mitochondrion | 29.41 | 25.71 |
GSMUA_Achr2P13780_001 | Banana | cytosol | 18.52 | 20.68 |
CDX98352 | Canola | cytosol, nucleus, plasma membrane | 29.19 | 17.65 |
CDY06019 | Canola | cytosol | 33.12 | 17.55 |
CDX67781 | Canola | cytosol | 29.63 | 17.37 |
Protein Annotations
Gene3D:3.80.10.10 | MapMan:35.1 | EnsemblPlants:CDX76838 | ProteinID:CDX76838 | ProteinID:CDX76838.1 | InterPro:F-box-like_dom_sf |
InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00127345001 |
InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PFAM:PF00646 | PFscan:PS50181 | PANTHER:PTHR31639 |
PANTHER:PTHR31639:SF6 | SMART:SM00256 | SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0004EF46AA |
SEG:seg | : | : | : | : | : |
Description
BnaC08g34240D
Coordinates
chrLK031808:+:1360418..1362049
Molecular Weight (calculated)
52289.7 Da
IEP (calculated)
4.839
GRAVY (calculated)
-0.168
Length
459 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRLSSLPDE LLYHILSLLP TKSSVVTSSL SKRWLNLWKL NPNLDIDDSV FIHPQDGKGE RQHIRQSFVR FVDSVLAMQG DSPINTFSLK CITGIHPDTV
101: NRWICNVLQR GVSDLSLFTD FTCEDTEEDS YQLPRELFLS RTLVKLKLRS EHCVDWWWPG GIWSDSLALA MLKSLSIDSD LIFCGEVEEF IPSFTALEEL
201: RMGSMEWRES DVTVSSSTLR TLSLHGTGCE EFVNPTSVSF DTPNLRVLSY YDLVAEDYPL DDDEGNVFVN FGNVVKLMNG IQNVQKLSFT ADTLEVLSQC
301: CDTMPVFNNL KFLGITSEEG RGWQAMPALL KNCPRLETII LEGLLHYETD KCGDACPCIS REGRGRSLRA CPVNRLEIQG FRATMKEMTM IKHFLDYFPG
401: LKRLDVVIED NEPTQLRNPE LSKCVKEMFN LYSRLFPSCS VELMVSGFLQ KKWRAQGHI
101: NRWICNVLQR GVSDLSLFTD FTCEDTEEDS YQLPRELFLS RTLVKLKLRS EHCVDWWWPG GIWSDSLALA MLKSLSIDSD LIFCGEVEEF IPSFTALEEL
201: RMGSMEWRES DVTVSSSTLR TLSLHGTGCE EFVNPTSVSF DTPNLRVLSY YDLVAEDYPL DDDEGNVFVN FGNVVKLMNG IQNVQKLSFT ADTLEVLSQC
301: CDTMPVFNNL KFLGITSEEG RGWQAMPALL KNCPRLETII LEGLLHYETD KCGDACPCIS REGRGRSLRA CPVNRLEIQG FRATMKEMTM IKHFLDYFPG
401: LKRLDVVIED NEPTQLRNPE LSKCVKEMFN LYSRLFPSCS VELMVSGFLQ KKWRAQGHI
001: MDRVSNLPEE VRCHILSFLP TKHAALTSVL SKSWLNLWKF ETNLDIDDSD FLHPEEGKAE RDEIRQSFVE FVDGVLALQG DSPIEKFSLK CITGIHPDHV
101: NRWICNVLQR GVSDLYLFTD FSDEDTEEDG GYRLPQEMFV SRTLVKLKLR SEHCVNWWHW DIGASLPNLK SLNIDSDLIF FGEMEKFLSS FPVLEEVHMA
201: NMEWRELDET MSSASLTKLS IHGTGVEEFE HPKSISIDTP NLLYLNYSDL VAEDYPLDDE GDVVLQFCNV VKLINGIQNI QTLYLTEDTL EVLTMCCESM
301: PVFNNLKTLG LKSDEGRGWQ AVPALLRNCP HLEFLIIEGL LHSVTDKCGD ACDCISREDK GRSLISCPVK KLEVRGFRGT IREKEMIRHF LEYFPCLDEM
401: EIDAEENDST NFEVPRILKV VAYRLHDVVS TEIVGHWQSS AQSGGWSQTQ MDEMYYELAP RNKERIYDMF FFMRRASSTV PPPPPQEMSQ DYLQMQLEVA
501: DLKERQRDQE AKLADLKERL RAMLDMIVDQ NPIIASALRA REATNSEREK ASSGQEMTEK ERDYDALFDI IVEQNPMLAS AVRALRATDS ERAETSSNQE
601: MTELGQATAT YFPPREGE
101: NRWICNVLQR GVSDLYLFTD FSDEDTEEDG GYRLPQEMFV SRTLVKLKLR SEHCVNWWHW DIGASLPNLK SLNIDSDLIF FGEMEKFLSS FPVLEEVHMA
201: NMEWRELDET MSSASLTKLS IHGTGVEEFE HPKSISIDTP NLLYLNYSDL VAEDYPLDDE GDVVLQFCNV VKLINGIQNI QTLYLTEDTL EVLTMCCESM
301: PVFNNLKTLG LKSDEGRGWQ AVPALLRNCP HLEFLIIEGL LHSVTDKCGD ACDCISREDK GRSLISCPVK KLEVRGFRGT IREKEMIRHF LEYFPCLDEM
401: EIDAEENDST NFEVPRILKV VAYRLHDVVS TEIVGHWQSS AQSGGWSQTQ MDEMYYELAP RNKERIYDMF FFMRRASSTV PPPPPQEMSQ DYLQMQLEVA
501: DLKERQRDQE AKLADLKERL RAMLDMIVDQ NPIIASALRA REATNSEREK ASSGQEMTEK ERDYDALFDI IVEQNPMLAS AVRALRATDS ERAETSSNQE
601: MTELGQATAT YFPPREGE
Arabidopsis Description
F-box/LRR-repeat protein At3g58940 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXQ8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.