CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67783	Canola	cytosol	91.78	91.57
CDX98355	Canola	cytosol	85.45	86.26
CDX67786	Canola	cytosol	35.92	85.96
CDX67785	Canola	cytosol	37.09	82.29
AT3G59250.1	Thale cress	cytosol	68.08	68.24
CDX67782	Canola	cytosol	47.42	46.33
CDX98353	Canola	cytosol	44.84	43.81
CDX71909	Canola	cytosol	52.35	43.64
CDY57500	Canola	cytosol	47.42	42.62
CDX98357	Canola	cytosol	32.39	39.88
CDX67788	Canola	cytosol	29.11	38.27
CDY06017	Canola	nucleus	51.17	37.65
CDY58541	Canola	cytosol	38.26	35.67
CDX98340	Canola	cytosol	17.61	34.25
CDX98338	Canola	cytosol	32.63	34.15
CDX98342	Canola	cytosol	31.46	34.01
CDY29185	Canola	cytosol	34.04	33.96
CDY00593	Canola	cytosol	29.34	33.88
CDY67935	Canola	cytosol	35.21	33.86
CDX67768	Canola	cytosol	32.39	33.82
CDX95484	Canola	cytosol	27.93	33.81
CDY59410	Canola	cytosol	40.14	33.79
CDY33289	Canola	cytosol	40.14	33.79
CDY49258	Canola	cytosol	37.79	33.75
CDX84742	Canola	cytosol	35.68	33.41
CDX76838	Canola	cytosol	35.92	33.33
CDX98334	Canola	golgi, mitochondrion, plasma membrane	24.65	33.23
CDX67770	Canola	cytosol	30.52	33.16
CDY34798	Canola	peroxisome	35.68	33.12
CDX67769	Canola	cytosol	32.16	32.85
CDY65456	Canola	peroxisome	37.32	32.65
CDX98339	Canola	cytosol, extracellular	31.22	32.44
CDY65604	Canola	cytosol	36.38	32.02
CDY18865	Canola	plastid	22.77	31.91
CDY65605	Canola	cytosol	20.66	31.77
CDY50412	Canola	cytosol, nucleus, peroxisome	32.39	31.15
CDX89015	Canola	cytosol	33.8	30.38
CDY29195	Canola	cytosol	34.98	27.64
CDY00610	Canola	mitochondrion	34.04	27.62
CDY06019	Canola	cytosol	52.11	25.64
CDX89484	Canola	cytosol	37.32	25.6
CDY29197	Canola	cytosol	34.04	25.22
CDY07837	Canola	cytosol	32.16	25.18
CDY29196	Canola	cytosol	32.39	25.09
CDY07824	Canola	cytosol	32.16	25.0
CDY07822	Canola	cytosol	34.51	24.83
CDX98352	Canola	cytosol, nucleus, plasma membrane	43.43	24.37
CDX67781	Canola	cytosol	43.19	23.5
GSMUA_Achr2P13780_001	Banana	cytosol	21.83	22.63

Protein Annotations

EnsemblPlants:CDX98354	EnsemblPlantsGene:GSBRNA2T00105908001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	PFAM:PF00646	PFscan:PS50181	ProteinID:CDX98354	ProteinID:CDX98354.1
SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EE1415	MapMan:35.1	:

Description

BnaC06g17150D

Coordinates

chrLK031904:-:775248..776790

Molecular Weight (calculated)

47775.6 Da

IEP (calculated)

4.770

GRAVY (calculated)

0.091

Length

426 amino acids

Sequence
(BLAST)

001: MISSKKMDRI SNLPEALISH ILSFLPTEES ALTSVLSKKW RYLFADRPNL DFDGSGIHDF SLKCGHGVDP VCVTNWILNV LERGVSDLDL HFNLVGVCLP
101: SEVFMSKSLV RLRIESQNVI PMDVEDVFLP KLETLYLNKV MLGNCGDCFE KVTSGCHVLE ELVLINVYSD FWNRSVSSKT LKRLILSCID YDKNPDSVSF
201: DTPNVVFLEY YDYVAGKYPK VKFNSLVEAS IDLAMTSEQH GLSSYEHLVG DVTDFLVGIR NVQTLNISAN TLEVLTFCCD HIPVFHNMIG LTIQTRKSGW
301: ESLPALFKKC PNLETLVFDG LSHTFTVKCM DVDGCLCKFS GEVPTCLSSS PVKVLKILRF GDSGVEKETD LIKHFLETMP QLEQLMIYYD TLFDDSVIEL
401: SSELKSFPTK ASPSCEIQVI FGDPSS

Best Arabidopsis Sequence Match ( AT3G59250.1 )
(BLAST)

001: MDIGPKDKIS NLPEALICHI LSFLPIEDSA LTSVLSKRWR YLFAFRPNLV FDDSVCLRPP CGHGVIPDYV TSWILNVLER GVLDLDLQVN VNGVRLPSKV
101: FVSKSLVRLR IESGNVRGID VDDVFLPKLK SLYLHTIMLG KGEDCFEKLT SGCHVLEELV LNNVYSNVWN RSVSSKTLKR LTLWCTESYD KNPHSVLFDT
201: PNLVYLKYSD YVAAKYPKVN FSSLVDATIG LAMTSDQDAN ASYDALVGNA TDFLMGICNV QILCLSANSL AVLTFCCESI PVFNNLIQLT IKTNQSVGWE
301: SLPALLKNCP ILETLVFEGL LHMYTIKCGD VDGCLCKYSG EVPSCLSSSP VKVLKILRFG EYGIVNQIEM IKIFLETMPH LEQLTVYYNT PIGGDLIEEV
401: SSQLKNFARE ASPNCEIQVI PDVLS

Arabidopsis Description

F-box/LRR-repeat protein At3g59250 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.