CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98340	Canola	cytosol	36.1	45.66
CDX98334	Canola	golgi, mitochondrion, plasma membrane	43.32	37.97
CDX95484	Canola	cytosol	44.04	34.66
CDX67785	Canola	cytosol	23.83	34.38
CDY18865	Canola	plastid	34.3	31.25
CDX98342	Canola	cytosol	43.32	30.46
CDX67768	Canola	cytosol	44.77	30.39
CDX67769	Canola	cytosol	45.13	29.98
CDY29185	Canola	cytosol	45.85	29.74
CDX67770	Canola	cytosol	41.88	29.59
CDX98338	Canola	cytosol	43.32	29.48
CDY58541	Canola	cytosol	46.93	28.45
CDY65456	Canola	peroxisome	49.46	28.13
CDX98339	Canola	cytosol, extracellular	41.16	27.8
CDY65604	Canola	cytosol	48.38	27.69
CDY49258	Canola	cytosol	47.65	27.67
CDX84742	Canola	cytosol	45.13	27.47
AT3G58910.1	Thale cress	cytosol, nucleus, peroxisome	20.94	27.1
CDY67935	Canola	cytosol	43.32	27.09
CDY34798	Canola	peroxisome	44.77	27.02
CDX76838	Canola	cytosol	44.4	26.8
AT3G58880.1	Thale cress	cytosol	41.88	25.55
CDY07824	Canola	cytosol	48.74	24.64
CDY29195	Canola	cytosol	47.65	24.49
CDY00593	Canola	cytosol	32.49	24.39
CDY07837	Canola	cytosol	47.29	24.08
CDY50412	Canola	cytosol, nucleus, peroxisome	37.55	23.48
CDX89484	Canola	cytosol	52.35	23.35
CDY29197	Canola	cytosol	48.38	23.3
CDY07822	Canola	cytosol	49.1	22.97
CDX67782	Canola	cytosol	35.38	22.48
CDX67783	Canola	cytosol	33.94	22.01
CDY29196	Canola	cytosol	42.96	21.64
CDX98355	Canola	cytosol	32.85	21.56
CDX67788	Canola	cytosol	24.91	21.3
CDX98354	Canola	cytosol	31.77	20.66
CDX98357	Canola	cytosol	25.63	20.52
CDX98353	Canola	cytosol	32.13	20.41
CDY59410	Canola	cytosol	33.57	18.38
CDY33289	Canola	cytosol	33.21	18.18
CDX71909	Canola	cytosol	32.49	17.61
CDY57500	Canola	cytosol	28.88	16.88
CDY06017	Canola	nucleus	33.94	16.23
CDX89015	Canola	cytosol	27.44	16.03
CDY00610	Canola	mitochondrion	27.8	14.67
CDX98352	Canola	cytosol, nucleus, plasma membrane	33.21	12.12
CDX67781	Canola	cytosol	33.57	11.88
GSMUA_Achr2P13780_001	Banana	cytosol	16.25	10.95
CDY06019	Canola	cytosol	31.41	10.05
CDX67786	Canola	cytosol	1.08	1.69

Protein Annotations

EnsemblPlants:CDY65605	EnsemblPlantsGene:GSBRNA2T00046905001	Gene3D:3.80.10.10	InterPro:FBD	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	ProteinID:CDY65605	ProteinID:CDY65605.1	SEG:seg	SMART:SM00579
SUPFAM:SSF52047	UniParc:UPI0004EF27CC	UniProt:A0A078JGG4	MapMan:35.1	:	:

Description

BnaCnng47900DBnaCnng47900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGG4]

Coordinates

chrLK034858:-:3870..5163

Molecular Weight (calculated)

31238.6 Da

IEP (calculated)

4.707

GRAVY (calculated)

-0.036

Length

277 amino acids

Sequence
(BLAST)

001: MYDVKGLDSN ETVSSASLKN LIIKSSLVSS GSFSFDTPRL VYLGYSDFIP ADYPLANLQN LSEARINISL TDDQVERARF PNEYNDEYDD AVRLVNMAKL
101: MSGIRNVQTL CFNSTTLEVL SLCCESMPVF NNLKVLVFYS GQSRWQAVPV LLKNCPHLET LCITGLLHVV TETCGDVCDC IPREDKGRSI TSCQVKRIEI
201: EGFIGTMRET TMISHFLEYF PCLEELLITV EGNCPRQFDV PEATDFRAQM LELYYKSLSC NVKLHGCESL LRKLTAQ

Best Arabidopsis Sequence Match ( AT1G52650.1 )
(BLAST)

001: MDHVSSLPEG VLCNIFSFLT TKEAALTSIL CKRWRNLLAF VPNLVIDDSV FLHPEEGKEE RYEIQQSFME FVDRVLALQG NSPIKKFSLK FRTDFASHRV
101: NAWISNVLAR GVSELDVLVI LYGAEFLPLS PKCFKSRNLV TLKINSLGID WLAGDIFLPM LKTLVLHSVK LCVDKFFFRA LPALEELVLF AVSWRDRDVT
201: VSNASIKTLT IKFNYYLGTL SLDTPSLVSF CFSDHVAKDY PLAKMEKLSE ARISLLVTEY QIERARAPNI YWVEDDVVLR LVNVGKLMKG IRNVQYLNLS
301: PNTLEVLSKC CESMPLFNNL KSLTIESNER RGWQAMPVLL RNCPHLETLV LEGLLHHVTE KCRNACDCVS QEEKGRSLTS CQVKVLEIKG FQGTTKEMHT
401: IKHFLEHFPC LREIKIHMEE NGPTQLRVPE VSQYIAEMME HYEKSSSCNV QLLVGGYLCK KWTTQ

Arabidopsis Description

F-box/LRR-repeat protein At1g52650 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSR7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.