Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 2
- golgi 2
- extracellular 2
- cytosol 3
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 52.64 | 51.4 |
| AT5G38386.2 | Thale cress | cytosol | 43.39 | 48.88 |
| AT3G58820.1 | Thale cress | cytosol | 44.27 | 48.67 |
| AT5G38392.1 | Thale cress | cytosol | 22.91 | 47.93 |
| AT3G58860.1 | Thale cress | cytosol | 47.8 | 47.48 |
| AT3G59000.1 | Thale cress | cytosol | 51.1 | 47.25 |
| AT4G13960.2 | Thale cress | cytosol | 47.58 | 46.55 |
| AT5G38390.1 | Thale cress | vacuole | 46.7 | 46.49 |
| AT5G38396.1 | Thale cress | cytosol | 46.92 | 46.1 |
| AT1G52650.1 | Thale cress | cytosol | 46.92 | 45.81 |
| AT3G58950.1 | Thale cress | cytosol | 41.85 | 45.56 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 21.15 | 44.86 |
| AT3G03040.1 | Thale cress | cytosol | 46.48 | 44.7 |
| AT3G58930.1 | Thale cress | cytosol | 47.14 | 44.4 |
| AT3G03030.1 | Thale cress | cytosol | 44.49 | 42.62 |
| AT3G58890.1 | Thale cress | extracellular | 27.31 | 42.32 |
| CDY65605 | Canola | cytosol | 25.55 | 41.88 |
| AT5G38391.1 | Thale cress | cytosol | 16.3 | 41.57 |
| AT4G14096.2 | Thale cress | cytosol | 39.21 | 38.03 |
| AT4G14103.2 | Thale cress | cytosol | 35.9 | 36.79 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 38.99 | 36.57 |
| AT3G59170.1 | Thale cress | cytosol | 37.44 | 35.94 |
| AT3G59160.1 | Thale cress | cytosol | 36.34 | 35.56 |
| AT1G58310.1 | Thale cress | cytosol | 39.21 | 35.25 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 34.14 | 34.99 |
| AT3G59250.1 | Thale cress | cytosol | 32.6 | 34.82 |
| AT3G59200.1 | Thale cress | cytosol | 39.21 | 34.23 |
| AT3G59230.1 | Thale cress | cytosol | 37.0 | 34.22 |
| AT2G42730.1 | Thale cress | cytosol | 33.92 | 33.7 |
| AT3G58940.1 | Thale cress | cytosol | 45.15 | 33.17 |
| AT4G00320.1 | Thale cress | cytosol | 35.46 | 31.76 |
| AT3G59240.1 | Thale cress | cytosol | 34.8 | 31.35 |
| AT5G41630.1 | Thale cress | cytosol | 31.06 | 30.99 |
| AT3G59150.1 | Thale cress | cytosol | 32.38 | 30.95 |
| AT5G41840.1 | Thale cress | cytosol | 36.78 | 30.93 |
| AT3G49150.1 | Thale cress | cytosol | 31.72 | 30.84 |
| AT5G41830.2 | Thale cress | cytosol | 34.8 | 30.74 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 34.36 | 30.06 |
| AT3G59180.1 | Thale cress | plasma membrane | 30.62 | 29.26 |
| AT3G59270.1 | Thale cress | cytosol | 21.15 | 28.66 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 30.62 | 25.98 |
| AT5G35926.2 | Thale cress | nucleus | 23.79 | 24.94 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 22.25 | 24.57 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:825057 | ProteinID:AEE79843.1 | ArrayExpress:AT3G58880 | EnsemblPlantsGene:AT3G58880 |
| RefSeq:AT3G58880 | TAIR:AT3G58880 | RefSeq:AT3G58880-TAIR-G | EnsemblPlants:AT3G58880.1 | TAIR:AT3G58880.1 | ProteinID:CAB88305.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003964 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006278 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | InterPro:IPR001810 | InterPro:IPR032675 |
| InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 | RefSeq:NP_191447.1 | PFAM:PF00646 | PFAM:PF07723 | PFscan:PS50181 |
| PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | UniProt:Q9LXR4 | SMART:SM00256 | SMART:SM00579 | SUPFAM:SSF52047 |
| SUPFAM:SSF81383 | UniParc:UPI000009D9E7 | SEG:seg | : | : | : |
Description
Putative F-box/LRR-repeat protein At3g58880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXR4]
Coordinates
chr3:-:21768485..21770167
Molecular Weight (calculated)
50766.5 Da
IEP (calculated)
7.587
GRAVY (calculated)
0.205
Length
454 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDLVSSLPD DLLGHILSLL TTKEAALTSI LSKRWRYLIA FVPYLEFDDS AFLNPEEGKQ TREGTRQSFI DFVDRVLALH GDSPIRKFSL KCKTGVDLDL
101: LNQWICNVLQ RGVLLIDLSM DLGHRCMFIE IFMSRTLVEL KLGSGCRIAF GPEHISALPM LKTLTLDSVS WSDSGQLERL LSACPALEAL NLANVHGSYP
201: NATVSIASLK TLTIKSVSLS GPAHVFSFDT PNLLCLNYTA LFEDDYPLVN LEYLVEAQIK FVLTDRLIKL VSVRKNGLLM LSEVQKLIRG ISSVRKLYLS
301: PGTLQVLGQC SQAMPVFNNL TFLVIESSMD IRWQAMPVLL KNCPRLETLV IKGGLVHCVA ADCGDACTCI SREEKGRSLA SCPVKRLEIR EFQGTLREME
401: MIKHFYYCFL CLKEMEIYVK DGRPQFLAPL ASDSNPFKHL LGRNVIIKVH GSLT
101: LNQWICNVLQ RGVLLIDLSM DLGHRCMFIE IFMSRTLVEL KLGSGCRIAF GPEHISALPM LKTLTLDSVS WSDSGQLERL LSACPALEAL NLANVHGSYP
201: NATVSIASLK TLTIKSVSLS GPAHVFSFDT PNLLCLNYTA LFEDDYPLVN LEYLVEAQIK FVLTDRLIKL VSVRKNGLLM LSEVQKLIRG ISSVRKLYLS
301: PGTLQVLGQC SQAMPVFNNL TFLVIESSMD IRWQAMPVLL KNCPRLETLV IKGGLVHCVA ADCGDACTCI SREEKGRSLA SCPVKRLEIR EFQGTLREME
401: MIKHFYYCFL CLKEMEIYVK DGRPQFLAPL ASDSNPFKHL LGRNVIIKVH GSLT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.