Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 55.36 | 57.11 |
| AT5G38392.1 | Thale cress | cytosol | 18.6 | 39.17 |
| AT5G38386.2 | Thale cress | cytosol | 34.14 | 38.71 |
| AT4G14096.2 | Thale cress | cytosol | 39.61 | 38.68 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 39.17 | 38.49 |
| AT4G14103.2 | Thale cress | cytosol | 36.76 | 37.92 |
| AT3G59150.1 | Thale cress | cytosol | 39.39 | 37.89 |
| AT3G59250.1 | Thale cress | cytosol | 35.01 | 37.65 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 39.82 | 37.6 |
| AT3G58950.1 | Thale cress | cytosol | 34.14 | 37.41 |
| AT5G38390.1 | Thale cress | vacuole | 36.98 | 37.06 |
| AT1G52650.1 | Thale cress | cytosol | 37.64 | 36.99 |
| AT3G58860.1 | Thale cress | cytosol | 36.98 | 36.98 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 17.29 | 36.92 |
| AT3G59230.1 | Thale cress | cytosol | 39.61 | 36.86 |
| AT5G38396.1 | Thale cress | cytosol | 37.2 | 36.8 |
| AT4G13960.2 | Thale cress | cytosol | 36.76 | 36.21 |
| AT1G58310.1 | Thale cress | cytosol | 39.17 | 35.45 |
| AT3G59000.1 | Thale cress | cytosol | 38.07 | 35.44 |
| AT3G59170.1 | Thale cress | cytosol | 36.54 | 35.31 |
| AT3G03040.1 | Thale cress | cytosol | 36.32 | 35.17 |
| AT3G59240.1 | Thale cress | cytosol | 38.29 | 34.72 |
| AT3G59160.1 | Thale cress | cytosol | 34.79 | 34.27 |
| AT3G59200.1 | Thale cress | cytosol | 38.73 | 34.04 |
| AT3G58880.1 | Thale cress | cytosol | 33.7 | 33.92 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 38.51 | 33.91 |
| AT3G58820.1 | Thale cress | cytosol | 30.63 | 33.9 |
| AT3G58930.1 | Thale cress | cytosol | 35.45 | 33.61 |
| AT3G59180.1 | Thale cress | plasma membrane | 34.57 | 33.26 |
| AT3G03030.1 | Thale cress | cytosol | 34.14 | 32.91 |
| AT3G49150.1 | Thale cress | cytosol | 33.48 | 32.76 |
| AT5G38391.1 | Thale cress | cytosol | 12.69 | 32.58 |
| AT3G59270.1 | Thale cress | cytosol | 23.63 | 32.24 |
| AT4G00320.1 | Thale cress | cytosol | 35.45 | 31.95 |
| AT5G41840.1 | Thale cress | cytosol | 37.64 | 31.85 |
| AT5G41830.2 | Thale cress | cytosol | 35.67 | 31.71 |
| AT3G58890.1 | Thale cress | extracellular | 19.91 | 31.06 |
| AT5G41630.1 | Thale cress | cytosol | 29.32 | 29.45 |
| AT5G35926.2 | Thale cress | nucleus | 27.35 | 28.87 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 29.32 | 25.05 |
| AT3G58940.1 | Thale cress | cytosol | 33.04 | 24.43 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 18.16 | 20.19 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:818873 | ProteinID:AAD21734.1 | ProteinID:AEC10161.2 | EMBL:AK228521 |
| ArrayExpress:AT2G42730 | EnsemblPlantsGene:AT2G42730 | RefSeq:AT2G42730 | TAIR:AT2G42730 | RefSeq:AT2G42730-TAIR-G | EnsemblPlants:AT2G42730.1 |
| TAIR:AT2G42730.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001810 |
| InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 | RefSeq:NP_001189735.1 | PFAM:PF00646 | PFAM:PF07723 |
| PO:PO:0000293 | PFscan:PS50181 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | UniProt:Q0WR05 | SMART:SM00579 |
| SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0000DB52A8 | SEG:seg | : | : |
Description
F-box/LRR-repeat protein At2g42730 [Source:UniProtKB/Swiss-Prot;Acc:Q0WR05]
Coordinates
chr2:-:17789404..17791582
Molecular Weight (calculated)
51590.5 Da
IEP (calculated)
9.776
GRAVY (calculated)
-0.061
Length
457 amino acids
Sequence
(BLAST)
(BLAST)
001: MNAKDVISRL PDEVLGRILS LISTKEAVST SVLSKRWKNM FVLVSNLDID DRQSVPKTKQ NRIEIHRNYM AFVDKLLDTQ RGSSIKKLTL KSHVGVRGGT
101: DSSRIQSWIC NVLDHGVMDL DVFITLKGKS PPVPAMIFKS KTLVKLRVGR GFTIKLSQDV SLPLLRTLCL DSVNFVGGHN VVGTLISRCP VLEELVVEER
201: RCVDWTCSVS SPSLKRLHIR FDRKFTSISL DAPNLIYYKH SGYVLGKYPN VKLDSLIEAR LNLRMDETRM VGVRNGSLGS IPADMRNLIN GIRNVRILHL
301: SSHTLELLYF SCKEMPLFDS LVSLSIGNDK ARGWQMLPLL IKNSPNLETL IFMGLDHYIT NRCGDVCVCY DTDESITSCL SSSQVKVLEI LSYQGTTREL
401: NQMKHFLEKL PCLELVKICV VNNSNNLQTT MEMRNLMMLP RASSKCKIQV KVLTKNN
101: DSSRIQSWIC NVLDHGVMDL DVFITLKGKS PPVPAMIFKS KTLVKLRVGR GFTIKLSQDV SLPLLRTLCL DSVNFVGGHN VVGTLISRCP VLEELVVEER
201: RCVDWTCSVS SPSLKRLHIR FDRKFTSISL DAPNLIYYKH SGYVLGKYPN VKLDSLIEAR LNLRMDETRM VGVRNGSLGS IPADMRNLIN GIRNVRILHL
301: SSHTLELLYF SCKEMPLFDS LVSLSIGNDK ARGWQMLPLL IKNSPNLETL IFMGLDHYIT NRCGDVCVCY DTDESITSCL SSSQVKVLEI LSYQGTTREL
401: NQMKHFLEKL PCLELVKICV VNNSNNLQTT MEMRNLMMLP RASSKCKIQV KVLTKNN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.