Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G49150.1 | Thale cress | cytosol | 54.37 | 58.67 |
| AT3G59250.1 | Thale cress | cytosol | 47.82 | 56.71 |
| AT4G14096.2 | Thale cress | cytosol | 49.6 | 53.42 |
| AT4G14103.2 | Thale cress | cytosol | 44.64 | 50.79 |
| AT3G59230.1 | Thale cress | cytosol | 47.82 | 49.08 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 47.02 | 48.97 |
| AT1G58310.1 | Thale cress | cytosol | 48.41 | 48.32 |
| AT3G59270.1 | Thale cress | cytosol | 30.75 | 46.27 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 46.83 | 45.47 |
| AT3G59170.1 | Thale cress | cytosol | 41.47 | 44.19 |
| AT3G59160.1 | Thale cress | cytosol | 40.67 | 44.18 |
| AT3G59200.1 | Thale cress | cytosol | 44.84 | 43.46 |
| AT3G59180.1 | Thale cress | plasma membrane | 40.28 | 42.74 |
| AT4G00320.1 | Thale cress | cytosol | 42.86 | 42.6 |
| AT5G41840.1 | Thale cress | cytosol | 45.44 | 42.41 |
| AT5G41830.2 | Thale cress | cytosol | 42.06 | 41.25 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 36.51 | 39.57 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 16.47 | 38.78 |
| AT5G38386.2 | Thale cress | cytosol | 30.95 | 38.71 |
| AT5G41630.1 | Thale cress | cytosol | 34.92 | 38.68 |
| AT2G42730.1 | Thale cress | cytosol | 34.72 | 38.29 |
| AT3G58860.1 | Thale cress | cytosol | 34.33 | 37.86 |
| AT5G38392.1 | Thale cress | cytosol | 16.27 | 37.79 |
| AT5G38390.1 | Thale cress | vacuole | 34.13 | 37.72 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 32.94 | 37.47 |
| AT3G58950.1 | Thale cress | cytosol | 30.75 | 37.17 |
| AT5G38391.1 | Thale cress | cytosol | 13.1 | 37.08 |
| AT5G35926.2 | Thale cress | nucleus | 31.75 | 36.95 |
| AT4G13960.2 | Thale cress | cytosol | 33.93 | 36.85 |
| AT1G52650.1 | Thale cress | cytosol | 33.93 | 36.77 |
| AT3G03030.1 | Thale cress | cytosol | 34.52 | 36.71 |
| AT3G59000.1 | Thale cress | cytosol | 35.71 | 36.66 |
| AT5G38396.1 | Thale cress | cytosol | 33.13 | 36.15 |
| AT3G03040.1 | Thale cress | cytosol | 33.33 | 35.59 |
| AT3G59150.1 | Thale cress | cytosol | 33.53 | 35.58 |
| AT3G58820.1 | Thale cress | cytosol | 28.57 | 34.87 |
| AT3G58930.1 | Thale cress | cytosol | 33.33 | 34.85 |
| AT3G58880.1 | Thale cress | cytosol | 31.35 | 34.8 |
| AT3G58890.1 | Thale cress | extracellular | 19.05 | 32.76 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 29.37 | 27.66 |
| AT3G58940.1 | Thale cress | cytosol | 32.74 | 26.7 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 18.85 | 23.11 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:825093 | ProteinID:AEE79895.1 | ArrayExpress:AT3G59240 | EnsemblPlantsGene:AT3G59240 |
| RefSeq:AT3G59240 | TAIR:AT3G59240 | RefSeq:AT3G59240-TAIR-G | EnsemblPlants:AT3G59240.1 | TAIR:AT3G59240.1 | Unigene:At.54002 |
| ProteinID:CAB91594.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 |
| RefSeq:NP_191483.1 | PFAM:PF00646 | PFAM:PF07723 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | UniProt:Q9LX47 |
| SMART:SM00579 | SUPFAM:SSF52058 | SUPFAM:SSF81383 | UniParc:UPI00000A3080 | SEG:seg | : |
Description
Putative F-box/FBD/LRR-repeat protein At3g59240 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX47]
Coordinates
chr3:-:21898682..21900364
Molecular Weight (calculated)
57371.3 Da
IEP (calculated)
5.782
GRAVY (calculated)
0.023
Length
504 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDICCKDII SDLPEALICH LLSFVPTKEA ALTSLLSEKW RYLFAFAPIL DFDDSVWMQS PLVYMNEVHR KFMDFVDRVL GLQGNSTLVR FSLNCRNGID
101: RECIFRWISN VIERGVSDLD LGGNFVSNRS MPSSVFVSKS LVKLRIRTEN CTIIDLEDVF LPKLKTLDLS SIWFRDGDTC LLKLISGCQV LEDLTMSDLW
201: WDGYWNRSMS SKTLKRLTVH CSDWDRSPGS ISFDTPNLVY FEYFDLVADK YEVVNFDSLV EASIGLRMRH HQRAHASYGD LVVNATNLFM GISNVRILQL
301: FSNALEVLTF CCAPIPVFKK LIHLTVETDK DVGWESLPAL LKNCPNLETL VFKGLHHRST SKCQDTDGCL CKSSKDIRSC LSSSPVKVLK ILKFGEVASY
401: FGDEEKQLEL VKYFLETMPN LEQMILHYNT RISEGVKSQL DWLVPRVSSS KCSVQLICDN APTYPFYGGI ICDNFITPAP TYPFFGDPLH GMVIPYMGDQ
501: PHFI
101: RECIFRWISN VIERGVSDLD LGGNFVSNRS MPSSVFVSKS LVKLRIRTEN CTIIDLEDVF LPKLKTLDLS SIWFRDGDTC LLKLISGCQV LEDLTMSDLW
201: WDGYWNRSMS SKTLKRLTVH CSDWDRSPGS ISFDTPNLVY FEYFDLVADK YEVVNFDSLV EASIGLRMRH HQRAHASYGD LVVNATNLFM GISNVRILQL
301: FSNALEVLTF CCAPIPVFKK LIHLTVETDK DVGWESLPAL LKNCPNLETL VFKGLHHRST SKCQDTDGCL CKSSKDIRSC LSSSPVKVLK ILKFGEVASY
401: FGDEEKQLEL VKYFLETMPN LEQMILHYNT RISEGVKSQL DWLVPRVSSS KCSVQLICDN APTYPFYGGI ICDNFITPAP TYPFFGDPLH GMVIPYMGDQ
501: PHFI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.