Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G00320.1 | Thale cress | cytosol | 86.77 | 87.97 |
| AT5G41840.1 | Thale cress | cytosol | 64.98 | 61.85 |
| AT5G35926.2 | Thale cress | nucleus | 43.97 | 52.19 |
| AT5G41630.1 | Thale cress | cytosol | 46.11 | 52.09 |
| AT3G59250.1 | Thale cress | cytosol | 41.44 | 50.12 |
| AT4G14096.2 | Thale cress | cytosol | 43.58 | 47.86 |
| AT1G58310.1 | Thale cress | cytosol | 45.72 | 46.53 |
| AT3G59230.1 | Thale cress | cytosol | 44.16 | 46.23 |
| AT4G14103.2 | Thale cress | cytosol | 39.69 | 46.05 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 42.61 | 45.25 |
| AT3G59200.1 | Thale cress | cytosol | 44.75 | 44.23 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 43.58 | 43.16 |
| AT3G59270.1 | Thale cress | cytosol | 28.02 | 42.99 |
| AT3G59160.1 | Thale cress | cytosol | 38.72 | 42.89 |
| AT3G59170.1 | Thale cress | cytosol | 39.3 | 42.71 |
| AT3G59240.1 | Thale cress | cytosol | 41.25 | 42.06 |
| AT3G49150.1 | Thale cress | cytosol | 37.35 | 41.11 |
| AT3G59180.1 | Thale cress | plasma membrane | 37.16 | 40.21 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 34.63 | 38.28 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 15.76 | 37.85 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 32.49 | 37.7 |
| AT3G58860.1 | Thale cress | cytosol | 33.46 | 37.64 |
| AT3G03030.1 | Thale cress | cytosol | 33.66 | 36.5 |
| AT3G58950.1 | Thale cress | cytosol | 29.38 | 36.21 |
| AT5G38390.1 | Thale cress | vacuole | 32.1 | 36.18 |
| AT3G03040.1 | Thale cress | cytosol | 33.07 | 36.02 |
| AT5G38386.2 | Thale cress | cytosol | 28.21 | 35.98 |
| AT5G38392.1 | Thale cress | cytosol | 15.18 | 35.94 |
| AT5G38396.1 | Thale cress | cytosol | 32.3 | 35.93 |
| AT1G52650.1 | Thale cress | cytosol | 32.3 | 35.7 |
| AT2G42730.1 | Thale cress | cytosol | 31.71 | 35.67 |
| AT3G59000.1 | Thale cress | cytosol | 33.66 | 35.23 |
| AT3G58930.1 | Thale cress | cytosol | 32.68 | 34.85 |
| AT3G58880.1 | Thale cress | cytosol | 30.74 | 34.8 |
| AT4G13960.2 | Thale cress | cytosol | 31.32 | 34.7 |
| AT3G58820.1 | Thale cress | cytosol | 27.82 | 34.62 |
| AT3G59150.1 | Thale cress | cytosol | 31.91 | 34.53 |
| AT5G38391.1 | Thale cress | cytosol | 11.87 | 34.27 |
| AT3G58890.1 | Thale cress | extracellular | 19.07 | 33.45 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 26.46 | 25.42 |
| AT3G58940.1 | Thale cress | cytosol | 30.16 | 25.08 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 18.09 | 22.63 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:35.1 | EntrezGene:834188 | UniProt:A0A1P8BAY2 | ProteinID:AED94734.1 | ProteinID:ANM68754.1 |
| ArrayExpress:AT5G41830 | EnsemblPlantsGene:AT5G41830 | RefSeq:AT5G41830 | TAIR:AT5G41830 | RefSeq:AT5G41830-TAIR-G | EnsemblPlants:AT5G41830.2 |
| Unigene:At.55310 | ProteinID:BAB10658.1 | InterPro:F-box-like_dom_sf | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:Leu-rich_rpt_2 | RefSeq:NP_001330477.1 | RefSeq:NP_198998.1 | PFAM:PF07723 | PANTHER:PTHR31639 |
| PANTHER:PTHR31639:SF6 | SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI00084927FB | SEG:seg |
Description
RNI-like superfamily protein [Source:TAIR;Acc:AT5G41830]
Coordinates
chr5:-:16743636..16745519
Molecular Weight (calculated)
59154.3 Da
IEP (calculated)
7.284
GRAVY (calculated)
-0.101
Length
514 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSKKKCFDG PRDIISGLPD ALICHILSFL PTKEAASTTV LAKRWKPLLA FMPNLDFDES FYFDPLMTCE ERRKGSESFM LFVGSVLTLQ AEANATLNRF
101: YVKCEGVDQN SVLEWIPKVL KRGVLDIDLH IPSSRGFGSN STFYPLPSEI FVSKTLVRLK IQFQDGVNVN VECDVSLPML KTLHLDYVKM DTRMFQKLLS
201: GCHMLKELLL MNLIWEESSE PEPCYVTVSV PTLKILKFSR FENFVKAKDF KPIVLWSFDI PNLVYLEYLD TIADKYQHVR FDSLVEARLG LCKTSKQIKN
301: DNNNVTKLFM GICNVKILYL TEDALKVLGC CRETMPVFEN LIQLTIKTGL HVGWKSLPPL LKNCPNLQTL VFEGLNHIYR KRRSCGDENR PCMCKNLDNM
401: RVKKDIDACL SSSSVKVIKI LNFGDTGDFC QFWEIEEDCE FWEIVEDVAD HIKQVKQFLE TMPDLEQVTL YYNTPQDEDV MKVFKKLKKL RRVASAKCEV
501: QIISDNLNLS FTFR
101: YVKCEGVDQN SVLEWIPKVL KRGVLDIDLH IPSSRGFGSN STFYPLPSEI FVSKTLVRLK IQFQDGVNVN VECDVSLPML KTLHLDYVKM DTRMFQKLLS
201: GCHMLKELLL MNLIWEESSE PEPCYVTVSV PTLKILKFSR FENFVKAKDF KPIVLWSFDI PNLVYLEYLD TIADKYQHVR FDSLVEARLG LCKTSKQIKN
301: DNNNVTKLFM GICNVKILYL TEDALKVLGC CRETMPVFEN LIQLTIKTGL HVGWKSLPPL LKNCPNLQTL VFEGLNHIYR KRRSCGDENR PCMCKNLDNM
401: RVKKDIDACL SSSSVKVIKI LNFGDTGDFC QFWEIEEDCE FWEIVEDVAD HIKQVKQFLE TMPDLEQVTL YYNTPQDEDV MKVFKKLKKL RRVASAKCEV
501: QIISDNLNLS FTFR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.