Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G59170.1 | Thale cress | cytosol | 79.74 | 78.22 |
| AT4G14103.2 | Thale cress | cytosol | 48.92 | 51.24 |
| AT4G14096.2 | Thale cress | cytosol | 50.43 | 50.0 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 51.08 | 48.97 |
| AT1G58310.1 | Thale cress | cytosol | 53.23 | 48.91 |
| AT3G59250.1 | Thale cress | cytosol | 43.75 | 47.76 |
| AT3G59230.1 | Thale cress | cytosol | 48.28 | 45.62 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 48.49 | 43.35 |
| AT3G59200.1 | Thale cress | cytosol | 46.55 | 41.54 |
| AT5G38392.1 | Thale cress | cytosol | 19.4 | 41.47 |
| AT3G49150.1 | Thale cress | cytosol | 41.16 | 40.9 |
| AT3G59240.1 | Thale cress | cytosol | 44.18 | 40.67 |
| AT5G41840.1 | Thale cress | cytosol | 46.77 | 40.19 |
| AT3G59270.1 | Thale cress | cytosol | 28.45 | 39.4 |
| AT4G00320.1 | Thale cress | cytosol | 42.89 | 39.25 |
| AT5G41830.2 | Thale cress | cytosol | 42.89 | 38.72 |
| AT3G59180.1 | Thale cress | plasma membrane | 38.79 | 37.89 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 37.72 | 37.63 |
| AT5G38386.2 | Thale cress | cytosol | 32.54 | 37.47 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 35.56 | 37.25 |
| AT3G59000.1 | Thale cress | cytosol | 39.22 | 37.07 |
| AT5G38390.1 | Thale cress | vacuole | 36.42 | 37.06 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 17.03 | 36.92 |
| AT3G58880.1 | Thale cress | cytosol | 35.56 | 36.34 |
| AT3G58860.1 | Thale cress | cytosol | 35.78 | 36.32 |
| AT5G38391.1 | Thale cress | cytosol | 13.79 | 35.96 |
| AT5G38396.1 | Thale cress | cytosol | 35.78 | 35.93 |
| AT4G13960.2 | Thale cress | cytosol | 35.56 | 35.56 |
| AT1G52650.1 | Thale cress | cytosol | 35.56 | 35.48 |
| AT3G03030.1 | Thale cress | cytosol | 36.21 | 35.44 |
| AT2G42730.1 | Thale cress | cytosol | 34.27 | 34.79 |
| AT3G58950.1 | Thale cress | cytosol | 31.25 | 34.77 |
| AT3G58820.1 | Thale cress | cytosol | 30.6 | 34.38 |
| AT3G03040.1 | Thale cress | cytosol | 34.48 | 33.9 |
| AT5G41630.1 | Thale cress | cytosol | 33.19 | 33.85 |
| AT5G35926.2 | Thale cress | nucleus | 31.03 | 33.26 |
| AT3G59150.1 | Thale cress | cytosol | 32.97 | 32.21 |
| AT3G58930.1 | Thale cress | cytosol | 33.41 | 32.16 |
| AT3G58890.1 | Thale cress | extracellular | 19.61 | 31.06 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 32.76 | 28.41 |
| AT3G58940.1 | Thale cress | cytosol | 31.25 | 23.46 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 19.4 | 21.9 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:825085 | ProteinID:AEE79884.1 | ArrayExpress:AT3G59160 | EnsemblPlantsGene:AT3G59160 |
| RefSeq:AT3G59160 | TAIR:AT3G59160 | RefSeq:AT3G59160-TAIR-G | EnsemblPlants:AT3G59160.1 | TAIR:AT3G59160.1 | Unigene:At.53998 |
| ProteinID:CAB86943.1 | ProteinID:CAB91586.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt_2 | RefSeq:NP_191475.1 | PFAM:PF00646 | PFAM:PF07723 | PFscan:PS50181 | PANTHER:PTHR31639 |
| PANTHER:PTHR31639:SF6 | UniProt:Q9LX55 | SMART:SM00256 | SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 |
| UniParc:UPI00000A6994 | SEG:seg | : | : | : | : |
Description
Putative F-box/LRR-repeat protein At3g59160 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX55]
Coordinates
chr3:+:21875023..21876690
Molecular Weight (calculated)
52888.6 Da
IEP (calculated)
6.553
GRAVY (calculated)
-0.069
Length
464 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDSKRMDSG SKDMINDLPD ALLCHVLSYL TTKEAASTSL LSRRWRYLLA FVPNLEFDDS AYLHRDKRVK NPLHEKGLVG FVLTVDDKRK KLSTSFPDFV
101: DRILDLQGNS PLDKFSLKMV DDHDPVDPDC VAPWIHKVLV RGVSDLHLVI DMNEWTSLPA KIFLTETLVK LTLKIRDGPP IDVKHVHLPK LKTLHLESVM
201: FDEEDIGFSK LLSGCPELEE LVLHHIWSCV WTSCSVSVAT LKRLTFCCNN MKFCGMHEEN PNNVSFDTPN LVYLEYAEVI ANNYPKVNFD SLVEAKIDIW
301: MTNDQLDEVR IRDIYEKNVM VGNATDLIVG IRNVRVLCLS ADTLEVLTYC CKQIPIFNNL THVTIQSTPK VGWKSLLKLL KNSPKLQTLV FQGLLHRDTK
401: EEGVAIIKIE KQIEKVKHFL ETMPHLEQLV LHYDSSIDGD MKQLLMLSSL ASPKCKVQLI PLVT
101: DRILDLQGNS PLDKFSLKMV DDHDPVDPDC VAPWIHKVLV RGVSDLHLVI DMNEWTSLPA KIFLTETLVK LTLKIRDGPP IDVKHVHLPK LKTLHLESVM
201: FDEEDIGFSK LLSGCPELEE LVLHHIWSCV WTSCSVSVAT LKRLTFCCNN MKFCGMHEEN PNNVSFDTPN LVYLEYAEVI ANNYPKVNFD SLVEAKIDIW
301: MTNDQLDEVR IRDIYEKNVM VGNATDLIVG IRNVRVLCLS ADTLEVLTYC CKQIPIFNNL THVTIQSTPK VGWKSLLKLL KNSPKLQTLV FQGLLHRDTK
401: EEGVAIIKIE KQIEKVKHFL ETMPHLEQLV LHYDSSIDGD MKQLLMLSSL ASPKCKVQLI PLVT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.