Factsheet for AT3G59170.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 3
golgi 3
plasma membrane 3
endoplasmic reticulum 3
vacuole 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G59160.1	Thale cress	cytosol	78.22	79.74
AT4G14096.2	Thale cress	cytosol	50.53	51.07
AT4G14103.2	Thale cress	cytosol	47.78	51.02
AT3G59250.1	Thale cress	cytosol	44.61	49.65
AT3G59210.1	Thale cress	cytosol, nucleus, peroxisome	50.11	48.97
AT1G58310.1	Thale cress	cytosol	52.22	48.91
AT3G59230.1	Thale cress	cytosol	46.93	45.21
AT3G59200.1	Thale cress	cytosol	47.99	43.65
AT3G59190.2	Thale cress	cytosol, nucleus, plastid	47.57	43.35
AT5G38392.1	Thale cress	cytosol	19.45	42.4
AT3G49150.1	Thale cress	cytosol	41.23	41.76
AT3G59240.1	Thale cress	cytosol	44.19	41.47
AT3G59270.1	Thale cress	cytosol	28.96	40.9
AT5G41840.1	Thale cress	cytosol	46.3	40.56
AT3G58900.4	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	39.11	39.78
AT3G58910.1	Thale cress	cytosol, nucleus, peroxisome	17.97	39.72
AT5G41830.2	Thale cress	cytosol	42.71	39.3
AT4G00320.1	Thale cress	cytosol	42.07	39.25
AT5G38386.2	Thale cress	cytosol	32.98	38.71
AT3G59180.1	Thale cress	plasma membrane	38.69	38.53
AT2G42720.1	Thale cress	cytosol, nucleus, peroxisome	35.94	38.37
AT5G38390.1	Thale cress	vacuole	36.79	38.16
AT3G59000.1	Thale cress	cytosol	39.32	37.88
AT5G38396.1	Thale cress	cytosol	36.58	37.45
AT3G58880.1	Thale cress	cytosol	35.94	37.44
AT1G52650.1	Thale cress	cytosol	36.58	37.2
AT4G13960.2	Thale cress	cytosol	36.36	37.07
AT3G58820.1	Thale cress	cytosol	32.14	36.8
AT3G58860.1	Thale cress	cytosol	35.52	36.76
AT2G42730.1	Thale cress	cytosol	35.31	36.54
AT5G38391.1	Thale cress	cytosol	13.74	36.52
AT5G41630.1	Thale cress	cytosol	35.1	36.48
AT3G03030.1	Thale cress	cytosol	36.36	36.29
AT3G58950.1	Thale cress	cytosol	31.92	36.21
AT3G03040.1	Thale cress	cytosol	35.31	35.38
AT5G35926.2	Thale cress	nucleus	31.5	34.41
AT3G59150.1	Thale cress	cytosol	34.25	34.11
AT3G58930.1	Thale cress	cytosol	34.25	33.61
AT3G58890.1	Thale cress	extracellular	20.3	32.76
AT1G56610.1	Thale cress	endoplasmic reticulum	33.4	29.53
AT3G58940.1	Thale cress	cytosol	32.35	24.76
GSMUA_Achr2P13780_001	Banana	cytosol	20.72	23.84

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EntrezGene:825086	ProteinID:AEE79885.1	ArrayExpress:AT3G59170	EnsemblPlantsGene:AT3G59170
RefSeq:AT3G59170	TAIR:AT3G59170	RefSeq:AT3G59170-TAIR-G	EnsemblPlants:AT3G59170.1	TAIR:AT3G59170.1	Unigene:At.53999
ProteinID:CAB91587.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2
RefSeq:NP_191476.1	PFAM:PF00646	PFAM:PF07723	PO:PO:0000084	PO:PO:0001016	PO:PO:0007616
PO:PO:0009046	PO:PO:0025281	PFscan:PS50181	PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	UniProt:Q9LX54
SMART:SM00256	SMART:SM00579	SUPFAM:SSF52058	SUPFAM:SSF81383	UniParc:UPI00000AB92A	:

Description

Putative F-box/LRR-repeat protein At3g59170 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX54]

Coordinates

chr3:+:21878167..21879799

Molecular Weight (calculated)

54123.4 Da

IEP (calculated)

8.737

GRAVY (calculated)

-0.029

Length

473 amino acids

Sequence
(BLAST)

001: MDSVSKDMIN VLPDALLCHI LSFLTTKEAA STSLLSRRWR YLLAFVPNLE FDDSVYLHRD KRVKNTLHEK GFVGFVLLVN NKRKKLSTSF PDFVDRILAL
101: QGNSPLDKFS LKMVDGHDPV DPDSVVPWIH KVLVRGVSDL HLVVDMNEWT SDPLPSRIFL SETLVKLTIK IRDGPFIDVK HVHLPKLKTL YLQSVMFDEN
201: DIGFRKLLSG CPVLEELVLD GMGSCVWTSF TVSVATLKRL TFCCQKMSSF GYMHDDENPN NVSFDTPNLV YLEYAQVIAN NYPKVNFDLL VEAKIDIWMT
301: VDQIREVRLR KNEVNCMVGN ATDFIVGLRN VRVLYLSPET LEVLTYCCKQ IPIFENLSHL TIKSDPNVGW KPLTKLLKNS PKLETLVFQG LLHRDNKEDV
401: AISSSSVKVL KIFLSGDKLK KQIEKVKHFL KTMPRLEQLV FYYDVKVLSQ LHMLSRLASP KCKIHLIPSR ESV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.