Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G03040.1 | Thale cress | cytosol | 70.89 | 71.19 |
| CDY58541 | Canola | cytosol | 60.34 | 62.58 |
| AT3G58930.1 | Thale cress | cytosol | 59.7 | 58.71 |
| AT3G58950.1 | Thale cress | cytosol | 48.31 | 54.92 |
| AT3G58820.1 | Thale cress | cytosol | 46.62 | 53.51 |
| AT4G13960.2 | Thale cress | cytosol | 51.48 | 52.59 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 51.48 | 52.47 |
| AT5G38386.2 | Thale cress | cytosol | 44.51 | 52.36 |
| AT1G52650.1 | Thale cress | cytosol | 51.05 | 52.04 |
| AT5G38396.1 | Thale cress | cytosol | 50.42 | 51.73 |
| AT5G38390.1 | Thale cress | vacuole | 49.16 | 51.1 |
| AT3G59000.1 | Thale cress | cytosol | 52.11 | 50.31 |
| AT3G58890.1 | Thale cress | extracellular | 30.59 | 49.49 |
| AT3G58860.1 | Thale cress | cytosol | 46.62 | 48.36 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 21.73 | 48.13 |
| AT5G38392.1 | Thale cress | cytosol | 21.1 | 46.08 |
| AT3G58880.1 | Thale cress | cytosol | 42.62 | 44.49 |
| AT3G58940.1 | Thale cress | cytosol | 53.16 | 40.78 |
| AT4G14096.2 | Thale cress | cytosol | 40.08 | 40.6 |
| AT3G59250.1 | Thale cress | cytosol | 36.08 | 40.24 |
| AT4G14103.2 | Thale cress | cytosol | 36.71 | 39.28 |
| AT1G58310.1 | Thale cress | cytosol | 40.08 | 37.62 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 37.55 | 36.78 |
| AT3G59170.1 | Thale cress | cytosol | 36.29 | 36.36 |
| AT3G59160.1 | Thale cress | cytosol | 35.44 | 36.21 |
| AT3G59200.1 | Thale cress | cytosol | 39.24 | 35.77 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 33.12 | 35.44 |
| AT3G59230.1 | Thale cress | cytosol | 36.71 | 35.44 |
| AT5G38391.1 | Thale cress | cytosol | 13.29 | 35.39 |
| AT3G49150.1 | Thale cress | cytosol | 34.18 | 34.69 |
| AT3G59240.1 | Thale cress | cytosol | 36.71 | 34.52 |
| AT2G42730.1 | Thale cress | cytosol | 32.91 | 34.14 |
| AT4G00320.1 | Thale cress | cytosol | 36.5 | 34.12 |
| AT5G41830.2 | Thale cress | cytosol | 36.5 | 33.66 |
| AT5G41840.1 | Thale cress | cytosol | 37.76 | 33.15 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 35.65 | 32.56 |
| AT3G59270.1 | Thale cress | cytosol | 22.78 | 32.24 |
| AT3G59150.1 | Thale cress | cytosol | 31.65 | 31.58 |
| AT5G41630.1 | Thale cress | cytosol | 29.32 | 30.55 |
| AT3G59180.1 | Thale cress | plasma membrane | 30.59 | 30.53 |
| AT5G35926.2 | Thale cress | nucleus | 25.11 | 27.48 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 29.32 | 25.98 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 20.68 | 23.84 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:821153 | UniProt:A0A178VEC7 | ProteinID:AAF26957.1 | ProteinID:AEE73894.1 |
| EMBL:AK227875 | ArrayExpress:AT3G03030 | EnsemblPlantsGene:AT3G03030 | RefSeq:AT3G03030 | TAIR:AT3G03030 | RefSeq:AT3G03030-TAIR-G |
| EnsemblPlants:AT3G03030.1 | TAIR:AT3G03030.1 | EMBL:BT006453 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR001810 | InterPro:IPR032675 |
| InterPro:LRR_dom_sf | RefSeq:NP_186953.1 | ProteinID:OAP04807.1 | PFAM:PF00646 | PFAM:PF08387 | PO:PO:0000293 |
| PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | UniProt:Q9M8U4 | SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 |
| UniParc:UPI000009F98E | : | : | : | : | : |
Description
F-box/LRR-repeat protein At3g03030 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8U4]
Coordinates
chr3:+:682054..684083
Molecular Weight (calculated)
54397.6 Da
IEP (calculated)
4.801
GRAVY (calculated)
-0.177
Length
474 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLVSSLPDD VRCHILSFLT TKESALTSVL SKKWRNLFTL VPNLDLDDSE YLHPEETKWE REEILDSFLD FVERVLSLQG NGPIRRFSLR CESGVPPARL
101: NRWLCKVLQR GVADLELIID FEDGYLLPRE LFVSETLVNL RLKSEFGCIH WWPGAEGTFL PRLQSLDISS AMVFCDDKLQ KLLPCFPVIE ELRLVGMEWI
201: DSHVTVSCAT LTNQLLLSST GSRTSKNPKS VSFDTPNLLS LAYSDLVAED YPLVNMKSLF KARIILGVDD DQIARMRAPT NYLSEDDVVR RFGNVVKLMK
301: GIQNVQQLHL HSDTLEVLSM CCESMPVFNN VKTLGIKSDY DRGWQAVPAL LRNCPHLETL TFEGLVHHVT DKCGDACDCI FRKDKGRSLK SCPVKVVEIK
401: EFRVTMKEMH LIEHFLDNFP CLKEMKIYRE EYDPSPFGND PQVDDLILDM IEEYKDIYSC NVQLLEPCDK WDEQ
101: NRWLCKVLQR GVADLELIID FEDGYLLPRE LFVSETLVNL RLKSEFGCIH WWPGAEGTFL PRLQSLDISS AMVFCDDKLQ KLLPCFPVIE ELRLVGMEWI
201: DSHVTVSCAT LTNQLLLSST GSRTSKNPKS VSFDTPNLLS LAYSDLVAED YPLVNMKSLF KARIILGVDD DQIARMRAPT NYLSEDDVVR RFGNVVKLMK
301: GIQNVQQLHL HSDTLEVLSM CCESMPVFNN VKTLGIKSDY DRGWQAVPAL LRNCPHLETL TFEGLVHHVT DKCGDACDCI FRKDKGRSLK SCPVKVVEIK
401: EFRVTMKEMH LIEHFLDNFP CLKEMKIYRE EYDPSPFGND PQVDDLILDM IEEYKDIYSC NVQLLEPCDK WDEQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.