Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G59250.1 | Thale cress | cytosol | 50.11 | 55.06 |
| AT3G59240.1 | Thale cress | cytosol | 58.67 | 54.37 |
| AT4G14096.2 | Thale cress | cytosol | 48.18 | 48.08 |
| AT4G14103.2 | Thale cress | cytosol | 43.47 | 45.82 |
| AT3G59230.1 | Thale cress | cytosol | 46.47 | 44.2 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 44.97 | 43.39 |
| AT1G58310.1 | Thale cress | cytosol | 45.82 | 42.38 |
| AT3G59170.1 | Thale cress | cytosol | 41.76 | 41.23 |
| AT3G59160.1 | Thale cress | cytosol | 40.9 | 41.16 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 45.61 | 41.04 |
| AT3G59200.1 | Thale cress | cytosol | 45.61 | 40.96 |
| AT3G59270.1 | Thale cress | cytosol | 29.34 | 40.9 |
| AT4G00320.1 | Thale cress | cytosol | 42.4 | 39.05 |
| AT5G38391.1 | Thale cress | cytosol | 14.78 | 38.76 |
| AT5G41840.1 | Thale cress | cytosol | 44.54 | 38.52 |
| AT3G59180.1 | Thale cress | plasma membrane | 38.97 | 38.32 |
| AT5G38392.1 | Thale cress | cytosol | 17.56 | 37.79 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 37.26 | 37.42 |
| AT5G41830.2 | Thale cress | cytosol | 41.11 | 37.35 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 16.92 | 36.92 |
| AT3G58860.1 | Thale cress | cytosol | 35.55 | 36.32 |
| AT5G41630.1 | Thale cress | cytosol | 35.33 | 36.26 |
| AT5G38390.1 | Thale cress | vacuole | 35.12 | 35.96 |
| AT5G38386.2 | Thale cress | cytosol | 30.62 | 35.48 |
| AT1G52650.1 | Thale cress | cytosol | 34.9 | 35.05 |
| AT3G03040.1 | Thale cress | cytosol | 35.12 | 34.75 |
| AT5G38396.1 | Thale cress | cytosol | 34.26 | 34.63 |
| AT3G58930.1 | Thale cress | cytosol | 35.55 | 34.44 |
| AT3G03030.1 | Thale cress | cytosol | 34.69 | 34.18 |
| AT3G59000.1 | Thale cress | cytosol | 35.76 | 34.01 |
| AT3G58820.1 | Thale cress | cytosol | 29.98 | 33.9 |
| AT2G42730.1 | Thale cress | cytosol | 32.76 | 33.48 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 31.69 | 33.41 |
| AT5G35926.2 | Thale cress | nucleus | 30.84 | 33.26 |
| AT4G13960.2 | Thale cress | cytosol | 32.98 | 33.19 |
| AT3G58950.1 | Thale cress | cytosol | 29.55 | 33.09 |
| AT3G58880.1 | Thale cress | cytosol | 30.84 | 31.72 |
| AT3G59150.1 | Thale cress | cytosol | 31.69 | 31.16 |
| AT3G58890.1 | Thale cress | extracellular | 18.2 | 29.01 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 29.55 | 25.79 |
| AT3G58940.1 | Thale cress | cytosol | 33.62 | 25.4 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 19.7 | 22.38 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:35.1 | EntrezGene:824076 | UniProt:A0A2H1ZEK2 | ProteinID:AEE78505.2 | ArrayExpress:AT3G49150 |
| EnsemblPlantsGene:AT3G49150 | RefSeq:AT3G49150 | TAIR:AT3G49150 | RefSeq:AT3G49150-TAIR-G | EnsemblPlants:AT3G49150.1 | TAIR:AT3G49150.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001810 | RefSeq:NP_001319715.1 | PFAM:PF00646 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | SMART:SM00579 |
| SUPFAM:SSF52058 | SUPFAM:SSF81383 | UniParc:UPI0008490D67 | SEG:seg | : | : |
Description
F-box/RNI-like superfamily protein [Source:TAIR;Acc:AT3G49150]
Coordinates
chr3:+:18218858..18220430
Molecular Weight (calculated)
53321.1 Da
IEP (calculated)
4.525
GRAVY (calculated)
0.056
Length
467 amino acids
Sequence
(BLAST)
(BLAST)
001: MDICCKDIIS DHSKKDIISD LPEALICHIL SFLPIEDSAL TSVLSKKWQH LFAFRPNLEF DDAVVYLNPD GERNETIFEN FVDRVLSLQG DYPINKFSLT
101: CRDFTDPTCV SRWISNVMER GVSDLDLRCI VYWDNGTMPP DIFVSKALVH LRIETGNGAF IDVEDVFLPN LKTLYLNKVL LRHSDNGFVK LITSCHVLED
201: LFIMNICWDG YLKRSLSSKT LKRLTFFCED VHAVNPESVS FDTPNLVYFV YHDCVADKYK NMNFDSLVYA SICLQMTSHQ RTHASYEHLV GNATDFLLGI
301: SNVQILELFA NTIEVCIVIP SSSFLATLKQ KEDKQVSVTC LAGWESLPVL LKNCPDLESL IFDGLHHNDT IKCEDVDGCL CKSSRGIPSC LSSSPVQFLT
401: IWKFGEICDD YDDMEKQIEL VMYFLETMPN LEEMKLFYDT QIYEDVISKL QMLVTSSKCT VYIIPEV
101: CRDFTDPTCV SRWISNVMER GVSDLDLRCI VYWDNGTMPP DIFVSKALVH LRIETGNGAF IDVEDVFLPN LKTLYLNKVL LRHSDNGFVK LITSCHVLED
201: LFIMNICWDG YLKRSLSSKT LKRLTFFCED VHAVNPESVS FDTPNLVYFV YHDCVADKYK NMNFDSLVYA SICLQMTSHQ RTHASYEHLV GNATDFLLGI
301: SNVQILELFA NTIEVCIVIP SSSFLATLKQ KEDKQVSVTC LAGWESLPVL LKNCPDLESL IFDGLHHNDT IKCEDVDGCL CKSSRGIPSC LSSSPVQFLT
401: IWKFGEICDD YDDMEKQIEL VMYFLETMPN LEEMKLFYDT QIYEDVISKL QMLVTSSKCT VYIIPEV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.