Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003368.1-P | Field mustard | cytosol | 46.57 | 76.47 |
| CDX67788 | Canola | cytosol | 67.76 | 70.06 |
| CDX98357 | Canola | cytosol | 71.94 | 69.65 |
| AT3G59250.1 | Thale cress | cytosol | 43.58 | 34.35 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 48.66 | 33.68 |
| AT4G14096.2 | Thale cress | cytosol | 46.57 | 33.33 |
| AT1G58310.1 | Thale cress | cytosol | 49.85 | 33.07 |
| AT3G59230.1 | Thale cress | cytosol | 45.97 | 31.36 |
| AT3G59180.1 | Thale cress | plasma membrane | 43.88 | 30.95 |
| AT3G59240.1 | Thale cress | cytosol | 46.27 | 30.75 |
| AT4G14103.2 | Thale cress | cytosol | 40.0 | 30.25 |
| AT3G59200.1 | Thale cress | cytosol | 46.87 | 30.19 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 45.97 | 29.67 |
| AT3G49150.1 | Thale cress | cytosol | 40.9 | 29.34 |
| AT3G59170.1 | Thale cress | cytosol | 40.9 | 28.96 |
| AT3G59160.1 | Thale cress | cytosol | 39.4 | 28.45 |
| AT5G41830.2 | Thale cress | cytosol | 42.99 | 28.02 |
| AT4G00320.1 | Thale cress | cytosol | 42.39 | 28.01 |
| AT5G41840.1 | Thale cress | cytosol | 44.18 | 27.41 |
| AT5G38386.2 | Thale cress | cytosol | 32.54 | 27.05 |
| AT3G58890.1 | Thale cress | extracellular | 22.39 | 25.6 |
| AT1G52650.1 | Thale cress | cytosol | 34.33 | 24.73 |
| AT5G35926.2 | Thale cress | nucleus | 31.64 | 24.48 |
| AT3G58950.1 | Thale cress | cytosol | 30.45 | 24.46 |
| AT5G41630.1 | Thale cress | cytosol | 33.13 | 24.4 |
| AT5G38396.1 | Thale cress | cytosol | 33.13 | 24.03 |
| AT4G13960.2 | Thale cress | cytosol | 33.13 | 23.92 |
| AT5G38390.1 | Thale cress | vacuole | 32.54 | 23.9 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 33.13 | 23.87 |
| AT2G42730.1 | Thale cress | cytosol | 32.24 | 23.63 |
| AT3G58820.1 | Thale cress | cytosol | 28.96 | 23.49 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 30.75 | 23.25 |
| AT3G03030.1 | Thale cress | cytosol | 32.24 | 22.78 |
| AT3G58860.1 | Thale cress | cytosol | 31.04 | 22.76 |
| AT3G58930.1 | Thale cress | cytosol | 32.54 | 22.61 |
| AT3G59000.1 | Thale cress | cytosol | 32.84 | 22.4 |
| AT3G03040.1 | Thale cress | cytosol | 31.04 | 22.03 |
| AT3G59150.1 | Thale cress | cytosol | 30.75 | 21.68 |
| AT3G58880.1 | Thale cress | cytosol | 28.66 | 21.15 |
| AT5G38391.1 | Thale cress | cytosol | 9.55 | 17.98 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 27.76 | 17.38 |
| AT3G58940.1 | Thale cress | cytosol | 29.85 | 16.18 |
| AT5G38392.1 | Thale cress | cytosol | 10.45 | 16.13 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 8.36 | 13.08 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 14.33 | 11.68 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:825096 | ProteinID:AEE79898.1 | ArrayExpress:AT3G59270 | EnsemblPlantsGene:AT3G59270 |
| RefSeq:AT3G59270 | TAIR:AT3G59270 | RefSeq:AT3G59270-TAIR-G | EnsemblPlants:AT3G59270.1 | TAIR:AT3G59270.1 | Unigene:At.54004 |
| ProteinID:CAB91597.1 | InterPro:FBD | GO:GO:0003674 | GO:GO:0008150 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| RefSeq:NP_191486.1 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 |
| PO:PO:0007611 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009046 | PO:PO:0020100 |
| PO:PO:0025022 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | UniProt:Q9LX44 | SMART:SM00579 | SUPFAM:SSF52047 |
| UniParc:UPI00000A4C1F | SEG:seg | : | : | : | : |
Description
FBD-like domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9LX44]
Coordinates
chr3:-:21906545..21907872
Molecular Weight (calculated)
38453.4 Da
IEP (calculated)
4.618
GRAVY (calculated)
-0.176
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLDFDDSKR MHYGVTKQER VKMLQRFIKR VDGKLALCKN VPLNRFSIKC KDDVGPAPVI GWITNVLKRR VSELALDISS CWDWPMSTAI DGCNTMVQEF
101: WESCSVSSTS LKRLTYLKAN FDSLVEARLD LQMTHDQIHK AKFSADDPIQ HEGLVGNATV FFIGICNVRS LYLSYNTLEP LPVFNNLIQL TVKTDRLVGW
201: ESLTALLKNS PNLETLVFEG LLHRYDMKCQ SSDECLCKPW EEENIPTCLS LSPVKVLKIM KFGDIDEDED MDKMMDQVEY FLETMPNLEQ LIIHYETSID
301: EDVEEVLSQF QMVPREGLTE CRIQVISDNL VLSSI
101: WESCSVSSTS LKRLTYLKAN FDSLVEARLD LQMTHDQIHK AKFSADDPIQ HEGLVGNATV FFIGICNVRS LYLSYNTLEP LPVFNNLIQL TVKTDRLVGW
201: ESLTALLKNS PNLETLVFEG LLHRYDMKCQ SSDECLCKPW EEENIPTCLS LSPVKVLKIM KFGDIDEDED MDKMMDQVEY FLETMPNLEQ LIIHYETSID
301: EDVEEVLSQF QMVPREGLTE CRIQVISDNL VLSSI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.