Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol, peroxisome, golgi, plasma membrane, endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- extracellular 2
- golgi 2
- plasma membrane 2
- endoplasmic reticulum 2
- vacuole 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G58950.1 | Thale cress | cytosol | 52.26 | 58.27 |
| AT3G58860.1 | Thale cress | cytosol | 56.77 | 57.77 |
| AT3G58820.1 | Thale cress | cytosol | 50.32 | 56.66 |
| AT3G59000.1 | Thale cress | cytosol | 58.71 | 55.6 |
| AT5G38386.2 | Thale cress | cytosol | 48.17 | 55.58 |
| AT5G38390.1 | Thale cress | vacuole | 54.19 | 55.26 |
| AT4G13960.2 | Thale cress | cytosol | 55.05 | 55.17 |
| AT3G58930.1 | Thale cress | cytosol | 56.13 | 54.15 |
| AT1G52650.1 | Thale cress | cytosol | 53.33 | 53.33 |
| AT5G38396.1 | Thale cress | cytosol | 52.69 | 53.03 |
| AT3G03040.1 | Thale cress | cytosol | 53.55 | 52.75 |
| AT3G58880.1 | Thale cress | cytosol | 51.4 | 52.64 |
| AT3G58890.1 | Thale cress | extracellular | 32.47 | 51.54 |
| AT3G03030.1 | Thale cress | cytosol | 52.47 | 51.48 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 23.44 | 50.93 |
| AT5G38392.1 | Thale cress | cytosol | 22.15 | 47.47 |
| AT5G38391.1 | Thale cress | cytosol | 16.77 | 43.82 |
| AT4G14096.2 | Thale cress | cytosol | 42.37 | 42.09 |
| AT3G59250.1 | Thale cress | cytosol | 38.28 | 41.88 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 43.44 | 41.74 |
| AT3G59230.1 | Thale cress | cytosol | 42.37 | 40.12 |
| AT2G42730.1 | Thale cress | cytosol | 38.49 | 39.17 |
| AT3G59170.1 | Thale cress | cytosol | 39.78 | 39.11 |
| AT4G14103.2 | Thale cress | cytosol | 37.2 | 39.05 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 36.99 | 38.83 |
| AT3G58940.1 | Thale cress | cytosol | 51.4 | 38.67 |
| AT3G59160.1 | Thale cress | cytosol | 37.63 | 37.72 |
| AT1G58310.1 | Thale cress | cytosol | 40.65 | 37.43 |
| AT3G49150.1 | Thale cress | cytosol | 37.42 | 37.26 |
| AT3G59200.1 | Thale cress | cytosol | 41.51 | 37.12 |
| AT3G59240.1 | Thale cress | cytosol | 39.57 | 36.51 |
| AT5G41630.1 | Thale cress | cytosol | 34.84 | 35.6 |
| AT5G41840.1 | Thale cress | cytosol | 41.08 | 35.37 |
| AT3G59150.1 | Thale cress | cytosol | 36.13 | 35.37 |
| AT4G00320.1 | Thale cress | cytosol | 38.28 | 35.11 |
| AT5G41830.2 | Thale cress | cytosol | 38.28 | 34.63 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 38.28 | 34.3 |
| AT3G59270.1 | Thale cress | cytosol | 23.87 | 33.13 |
| AT3G59180.1 | Thale cress | plasma membrane | 33.55 | 32.84 |
| AT5G35926.2 | Thale cress | nucleus | 27.74 | 29.79 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 31.61 | 27.48 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 21.72 | 24.57 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:825059 | ProteinID:AEE79848.1 | ArrayExpress:AT3G58900 | EnsemblPlantsGene:AT3G58900 |
| RefSeq:AT3G58900 | TAIR:AT3G58900 | RefSeq:AT3G58900-TAIR-G | EnsemblPlants:AT3G58900.4 | TAIR:AT3G58900.4 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | UniProt:F4J721 | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | RefSeq:NP_001190131.1 | PFAM:PF00646 |
| PO:PO:0000293 | PFscan:PS50181 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | SMART:SM00256 | SMART:SM00579 |
| SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0001E92E09 | : | : | : |
Description
F-box/RNI-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J721]
Coordinates
chr3:+:21772838..21774873
Molecular Weight (calculated)
53420.0 Da
IEP (calculated)
5.313
GRAVY (calculated)
0.079
Length
465 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLFSSLPNE LLYHILSFLS TKEAALTSVL SKRWRNLFAF VPYLEFDDSV FLHPEERKRE KEGILQSFMD FVDRVLDLHG DSLIKTFSLK CKTGVDSDHV
101: DRWICNVLAR GVSDLDLFID FRDLYSLPHE VGVSRTLVVL RVGSESDLYW WQKFLCLPML KTLVLDSCWL CIGQFQILLL ACPALEELDM TNTRWKDSNV
201: TVSSSILKEL TIDLHGCCSV VNLKSLSFDA PSLVYFYYCD SLAEDYPQVN LKNLVEAQIN LLLTQAQIEQ VRALNNEMLV ADDVFPGLGN AWKLITGLRN
301: VQQLYLSPDT LEVLSRCCEG MPVFNNLKVL SIWSDMNRGW QAMPVLLRNC PHLETLIIEG LLHYATDKCG DVCDCISRDY KDHSLTSCPV KKLQIYEFRG
401: TIRELEMIKH FLKIFPCLKE MDIYAHENSH TLFKDPTIFE RVGKVMNFYN MLSSCSVQLL VRGPL
101: DRWICNVLAR GVSDLDLFID FRDLYSLPHE VGVSRTLVVL RVGSESDLYW WQKFLCLPML KTLVLDSCWL CIGQFQILLL ACPALEELDM TNTRWKDSNV
201: TVSSSILKEL TIDLHGCCSV VNLKSLSFDA PSLVYFYYCD SLAEDYPQVN LKNLVEAQIN LLLTQAQIEQ VRALNNEMLV ADDVFPGLGN AWKLITGLRN
301: VQQLYLSPDT LEVLSRCCEG MPVFNNLKVL SIWSDMNRGW QAMPVLLRNC PHLETLIIEG LLHYATDKCG DVCDCISRDY KDHSLTSCPV KKLQIYEFRG
401: TIRELEMIKH FLKIFPCLKE MDIYAHENSH TLFKDPTIFE RVGKVMNFYN MLSSCSVQLL VRGPL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.