Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G38391.1 | Thale cress | cytosol | 23.36 | 28.09 |
| AT5G38392.1 | Thale cress | cytosol | 27.57 | 27.19 |
| AT3G59000.1 | Thale cress | cytosol | 58.88 | 25.66 |
| AT5G38390.1 | Thale cress | vacuole | 51.87 | 24.34 |
| AT1G52650.1 | Thale cress | cytosol | 51.87 | 23.87 |
| AT4G13960.2 | Thale cress | cytosol | 51.4 | 23.71 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 50.93 | 23.44 |
| AT3G58860.1 | Thale cress | cytosol | 49.07 | 22.98 |
| AT3G58930.1 | Thale cress | cytosol | 51.4 | 22.82 |
| AT5G38396.1 | Thale cress | cytosol | 49.07 | 22.73 |
| AT3G58950.1 | Thale cress | cytosol | 43.46 | 22.3 |
| AT3G03040.1 | Thale cress | cytosol | 49.07 | 22.25 |
| AT3G03030.1 | Thale cress | cytosol | 48.13 | 21.73 |
| AT3G58880.1 | Thale cress | cytosol | 44.86 | 21.15 |
| AT5G38386.2 | Thale cress | cytosol | 39.72 | 21.09 |
| CDY65605 | Canola | cytosol | 27.1 | 20.94 |
| AT3G58890.1 | Thale cress | extracellular | 26.64 | 19.45 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 40.19 | 19.41 |
| AT3G59250.1 | Thale cress | cytosol | 38.32 | 19.29 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 42.52 | 18.8 |
| AT3G58820.1 | Thale cress | cytosol | 35.05 | 18.16 |
| AT3G59170.1 | Thale cress | cytosol | 39.72 | 17.97 |
| AT2G42730.1 | Thale cress | cytosol | 36.92 | 17.29 |
| AT4G14103.2 | Thale cress | cytosol | 35.51 | 17.16 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 41.59 | 17.15 |
| AT3G59160.1 | Thale cress | cytosol | 36.92 | 17.03 |
| AT3G49150.1 | Thale cress | cytosol | 36.92 | 16.92 |
| AT3G59150.1 | Thale cress | cytosol | 37.38 | 16.84 |
| AT1G58310.1 | Thale cress | cytosol | 39.72 | 16.83 |
| AT3G59200.1 | Thale cress | cytosol | 40.65 | 16.73 |
| AT4G14096.2 | Thale cress | cytosol | 36.45 | 16.67 |
| AT3G59240.1 | Thale cress | cytosol | 38.78 | 16.47 |
| AT3G59230.1 | Thale cress | cytosol | 36.92 | 16.09 |
| AT5G41830.2 | Thale cress | cytosol | 37.85 | 15.76 |
| AT5G41840.1 | Thale cress | cytosol | 38.78 | 15.37 |
| AT4G00320.1 | Thale cress | cytosol | 35.98 | 15.19 |
| AT5G41630.1 | Thale cress | cytosol | 32.24 | 15.16 |
| AT5G35926.2 | Thale cress | nucleus | 28.97 | 14.32 |
| AT3G59180.1 | Thale cress | plasma membrane | 31.78 | 14.32 |
| AT3G58940.1 | Thale cress | cytosol | 41.12 | 14.24 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 35.05 | 14.02 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 24.3 | 12.65 |
| AT3G59270.1 | Thale cress | cytosol | 13.08 | 8.36 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:825060 | ProteinID:AEE79849.1 | ArrayExpress:AT3G58910 | EnsemblPlantsGene:AT3G58910 |
| RefSeq:AT3G58910 | TAIR:AT3G58910 | RefSeq:AT3G58910-TAIR-G | EnsemblPlants:AT3G58910.1 | TAIR:AT3G58910.1 | ProteinID:CAB88308.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 |
| InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 | RefSeq:NP_191450.1 | PFAM:PF07723 |
| PFscan:PS50181 | PANTHER:PTHR31900 | PANTHER:PTHR31900:SF8 | UniProt:Q9LXR1 | SUPFAM:SSF52047 | SUPFAM:SSF81383 |
| UniParc:UPI00000A9B10 | SEG:seg | : | : | : | : |
Description
Putative F-box protein At3g58910 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXR1]
Coordinates
chr3:-:21775306..21776079
Molecular Weight (calculated)
23845.9 Da
IEP (calculated)
4.430
GRAVY (calculated)
0.285
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRVSSLPDE LLCHILSFLT TKETALTSLL SKREIIPLIK SVVFPTLIYA SFLVQLVSKL VKLKIGSGID LCWWTESIFL PMLKTLVLDS VEFCVARFEI
101: LFPACPALEE LEMANIKVLD SDATVSSASL KTLKIDSSVG SGSFSFDTPN LVYLGYSDFV AEDYPLANFQ NLFEARINLV VTKDQIERAR APNNGWLEDD
201: EDDIALRLGI RKSS
101: LFPACPALEE LEMANIKVLD SDATVSSASL KTLKIDSSVG SGSFSFDTPN LVYLGYSDFV AEDYPLANFQ NLFEARINLV VTKDQIERAR APNNGWLEDD
201: EDDIALRLGI RKSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.