Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G14103.2 | Thale cress | cytosol | 81.84 | 86.46 |
| AT1G58310.1 | Thale cress | cytosol | 64.1 | 59.41 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 56.84 | 54.96 |
| AT3G59230.1 | Thale cress | cytosol | 56.41 | 53.77 |
| AT3G59250.1 | Thale cress | cytosol | 48.5 | 53.41 |
| AT3G59170.1 | Thale cress | cytosol | 51.07 | 50.53 |
| AT3G59160.1 | Thale cress | cytosol | 50.0 | 50.43 |
| AT3G59200.1 | Thale cress | cytosol | 55.98 | 50.38 |
| AT3G59240.1 | Thale cress | cytosol | 53.42 | 49.6 |
| AT3G49150.1 | Thale cress | cytosol | 48.08 | 48.18 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 53.21 | 47.98 |
| AT3G59270.1 | Thale cress | cytosol | 33.33 | 46.57 |
| AT4G00320.1 | Thale cress | cytosol | 49.15 | 45.36 |
| AT3G59180.1 | Thale cress | plasma membrane | 45.73 | 45.05 |
| AT5G41840.1 | Thale cress | cytosol | 50.64 | 43.89 |
| AT5G41830.2 | Thale cress | cytosol | 47.86 | 43.58 |
| AT5G38392.1 | Thale cress | cytosol | 19.87 | 42.86 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 42.09 | 42.37 |
| AT5G38386.2 | Thale cress | cytosol | 35.9 | 41.69 |
| AT3G58950.1 | Thale cress | cytosol | 36.54 | 41.01 |
| AT3G58860.1 | Thale cress | cytosol | 39.96 | 40.92 |
| AT3G03030.1 | Thale cress | cytosol | 40.6 | 40.08 |
| AT4G13960.2 | Thale cress | cytosol | 39.53 | 39.87 |
| AT5G38396.1 | Thale cress | cytosol | 39.32 | 39.83 |
| AT2G42730.1 | Thale cress | cytosol | 38.68 | 39.61 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 37.18 | 39.28 |
| AT3G58880.1 | Thale cress | cytosol | 38.03 | 39.21 |
| AT3G03040.1 | Thale cress | cytosol | 39.53 | 39.19 |
| AT1G52650.1 | Thale cress | cytosol | 38.89 | 39.14 |
| AT5G38390.1 | Thale cress | vacuole | 38.03 | 39.04 |
| AT3G58820.1 | Thale cress | cytosol | 33.97 | 38.5 |
| AT5G41630.1 | Thale cress | cytosol | 36.75 | 37.8 |
| AT3G59000.1 | Thale cress | cytosol | 39.53 | 37.68 |
| AT5G35926.2 | Thale cress | nucleus | 34.83 | 37.64 |
| AT3G58930.1 | Thale cress | cytosol | 38.03 | 36.93 |
| AT3G58890.1 | Thale cress | extracellular | 22.86 | 36.52 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 16.67 | 36.45 |
| AT5G38391.1 | Thale cress | cytosol | 13.46 | 35.39 |
| AT3G59150.1 | Thale cress | cytosol | 34.4 | 33.89 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 33.76 | 29.53 |
| AT3G58940.1 | Thale cress | cytosol | 38.68 | 29.29 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 20.51 | 23.36 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:827047 | ProteinID:AEE83371.1 | ProteinID:ANM67110.1 | ArrayExpress:AT4G14096 |
| EnsemblPlantsGene:AT4G14096 | RefSeq:AT4G14096 | TAIR:AT4G14096 | RefSeq:AT4G14096-TAIR-G | EnsemblPlants:AT4G14096.2 | EMBL:AY042860 |
| EMBL:AY128734 | Unigene:At.26157 | ProteinID:CAB10188.1 | ProteinID:CAB78451.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0008150 |
| InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 | RefSeq:NP_001319929.1 | RefSeq:NP_567421.1 |
| PFAM:PF00646 | PFAM:PF07723 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | UniProt:Q94B46 | SMART:SM00256 |
| SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI00000AA09F | : | : |
Description
F-box/LRR-repeat protein At4g14096 [Source:UniProtKB/Swiss-Prot;Acc:Q94B46]
Coordinates
chr4:+:8124359..8126535
Molecular Weight (calculated)
52875.9 Da
IEP (calculated)
4.705
GRAVY (calculated)
0.036
Length
468 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSGCRDII SSLPEAISCH ILSFLPTKEA ASTSVLSKKW RYLFAFVPNL DLDESVYLNP ENETEVSSSF MDFVDRVLAL QGNSPLHKFS LKIGDGVEPD
101: RIIPWINNVL ERGVSDLDLH VYMETEFVFP SEMFLSKTLV RLKLMLYPLL EFEDVYLPKL KTLYIDSCYF EKYGIGLTKL LSGCPILEDL VLDDIPWCTW
201: DFASVSVPTL KRLTFSTQVR DEFPKSVSID TPNLVYLKFT DTVAGKYPKV NFDSLVEAHI DLRLLQGHQG YGENDMVGNA TDFIMRICNV KTLYLSSNTL
301: QVLTYSCDAI PIFNNLTHLT IESNPEVGWQ SLPGLLKNSP NLETLIFQGL IHKATDKCGD VCLCKPREEI RSCLASSPVK VIKILKFGEI SDDMEKQREQ
401: IKYFLETMPN LEKMILYYNT TSVEDVTEVS SRLQRLVSKL ASSTCIVQLI SDNLSLSSTV STNGLLCF
101: RIIPWINNVL ERGVSDLDLH VYMETEFVFP SEMFLSKTLV RLKLMLYPLL EFEDVYLPKL KTLYIDSCYF EKYGIGLTKL LSGCPILEDL VLDDIPWCTW
201: DFASVSVPTL KRLTFSTQVR DEFPKSVSID TPNLVYLKFT DTVAGKYPKV NFDSLVEAHI DLRLLQGHQG YGENDMVGNA TDFIMRICNV KTLYLSSNTL
301: QVLTYSCDAI PIFNNLTHLT IESNPEVGWQ SLPGLLKNSP NLETLIFQGL IHKATDKCGD VCLCKPREEI RSCLASSPVK VIKILKFGEI SDDMEKQREQ
401: IKYFLETMPN LEKMILYYNT TSVEDVTEVS SRLQRLVSKL ASSTCIVQLI SDNLSLSSTV STNGLLCF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.