Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G14096.2 | Thale cress | cytosol | 86.46 | 81.84 |
| AT1G58310.1 | Thale cress | cytosol | 62.75 | 55.05 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 53.95 | 49.38 |
| AT3G59160.1 | Thale cress | cytosol | 51.24 | 48.92 |
| AT3G59230.1 | Thale cress | cytosol | 53.72 | 48.47 |
| AT3G59250.1 | Thale cress | cytosol | 46.05 | 48.0 |
| AT3G59170.1 | Thale cress | cytosol | 51.02 | 47.78 |
| AT3G59200.1 | Thale cress | cytosol | 54.85 | 46.73 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 53.95 | 46.05 |
| AT3G59240.1 | Thale cress | cytosol | 50.79 | 44.64 |
| AT3G49150.1 | Thale cress | cytosol | 45.82 | 43.47 |
| AT5G38392.1 | Thale cress | cytosol | 21.22 | 43.32 |
| AT3G59180.1 | Thale cress | plasma membrane | 46.28 | 43.16 |
| AT4G00320.1 | Thale cress | cytosol | 46.95 | 41.03 |
| AT5G41840.1 | Thale cress | cytosol | 49.44 | 40.56 |
| AT3G59270.1 | Thale cress | cytosol | 30.25 | 40.0 |
| AT5G41830.2 | Thale cress | cytosol | 46.05 | 39.69 |
| AT3G58860.1 | Thale cress | cytosol | 39.5 | 38.29 |
| AT5G38386.2 | Thale cress | cytosol | 34.31 | 37.72 |
| AT4G13960.2 | Thale cress | cytosol | 39.05 | 37.28 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 39.05 | 37.2 |
| AT2G42730.1 | Thale cress | cytosol | 37.92 | 36.76 |
| AT3G03030.1 | Thale cress | cytosol | 39.28 | 36.71 |
| AT3G58950.1 | Thale cress | cytosol | 34.54 | 36.69 |
| AT1G52650.1 | Thale cress | cytosol | 38.37 | 36.56 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 36.34 | 36.34 |
| AT5G38396.1 | Thale cress | cytosol | 37.7 | 36.15 |
| AT3G03040.1 | Thale cress | cytosol | 38.37 | 36.02 |
| AT3G58880.1 | Thale cress | cytosol | 36.79 | 35.9 |
| AT3G58820.1 | Thale cress | cytosol | 33.18 | 35.59 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 17.16 | 35.51 |
| AT5G38390.1 | Thale cress | vacuole | 36.34 | 35.31 |
| AT5G38391.1 | Thale cress | cytosol | 14.0 | 34.83 |
| AT3G59000.1 | Thale cress | cytosol | 38.37 | 34.62 |
| AT5G41630.1 | Thale cress | cytosol | 35.21 | 34.29 |
| AT3G58930.1 | Thale cress | cytosol | 36.34 | 33.4 |
| AT5G35926.2 | Thale cress | nucleus | 32.51 | 33.26 |
| AT3G58890.1 | Thale cress | extracellular | 21.22 | 32.08 |
| AT3G59150.1 | Thale cress | cytosol | 33.63 | 31.37 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 33.18 | 27.48 |
| AT3G58940.1 | Thale cress | cytosol | 35.44 | 25.4 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 21.44 | 23.11 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:827048 | ProteinID:AEE83373.1 | ArrayExpress:AT4G14103 | EnsemblPlantsGene:AT4G14103 |
| RefSeq:AT4G14103 | TAIR:AT4G14103 | RefSeq:AT4G14103-TAIR-G | EnsemblPlants:AT4G14103.2 | TAIR:AT4G14103.2 | Unigene:At.33309 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | UniProt:F4JUK8 | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0008150 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt_2 | RefSeq:NP_001190724.1 | PFAM:PF00646 | PFAM:PF07723 | PFscan:PS50181 | PANTHER:PTHR31639 |
| PANTHER:PTHR31639:SF6 | SMART:SM00256 | SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0001E92F72 |
Description
F-box/RNI-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JUK8]
Coordinates
chr4:+:8126915..8128833
Molecular Weight (calculated)
50282.7 Da
IEP (calculated)
4.769
GRAVY (calculated)
0.018
Length
443 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSGSRDVI SSLPDDISSH ILSFLPTKEA ASTSVLSKKW RYLFAFVPNL DLDDSVYLNP ENETEISTSF MDFVDRVLAL QGNSPLHKFS LKIGDGIDPV
101: RIIPWINNVL ERGVSDLDLH LNLESEFLLP SQVYLCKTLV WLKLRFGLYP TIDVEDVHLP KLKTLYIEAT HFEEHGVGLT KLLSGCPMLE DLVLDDISWF
201: IWDFASVSVP TLKRLRFSWQ ERDEFPKSVL LDTPNLVYLK FTDTVAGKYP KVNLDSLVEA HIDLRLLKPL LINYHQGYGE NDMVGNATDF IMRICNVKTL
301: YLSANTLQVL TYSCDAIPIF NNLTHLTIES NPRVGWQSVP GLLKNSPNLE TLIFQVIKIL KFGENSDDME KQREQIKYFL ETMPNLEKMI LYYNTPSVED
401: VTEVSSRLQR LVSKVASSTC IVQLISDNLS LSSTVSTNGL LCF
101: RIIPWINNVL ERGVSDLDLH LNLESEFLLP SQVYLCKTLV WLKLRFGLYP TIDVEDVHLP KLKTLYIEAT HFEEHGVGLT KLLSGCPMLE DLVLDDISWF
201: IWDFASVSVP TLKRLRFSWQ ERDEFPKSVL LDTPNLVYLK FTDTVAGKYP KVNLDSLVEA HIDLRLLKPL LINYHQGYGE NDMVGNATDF IMRICNVKTL
301: YLSANTLQVL TYSCDAIPIF NNLTHLTIES NPRVGWQSVP GLLKNSPNLE TLIFQVIKIL KFGENSDDME KQREQIKYFL ETMPNLEKMI LYYNTPSVED
401: VTEVSSRLQR LVSKVASSTC IVQLISDNLS LSSTVSTNGL LCF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.