Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 3
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65456 | Canola | peroxisome | 65.15 | 64.48 |
| CDX84742 | Canola | cytosol | 60.37 | 63.96 |
| CDX76838 | Canola | cytosol | 60.17 | 63.18 |
| CDY34798 | Canola | peroxisome | 59.54 | 62.53 |
| AT3G03030.1 | Thale cress | cytosol | 58.71 | 59.7 |
| AT3G03040.1 | Thale cress | cytosol | 58.09 | 59.32 |
| AT3G58950.1 | Thale cress | cytosol | 51.24 | 59.23 |
| AT3G59000.1 | Thale cress | cytosol | 57.26 | 56.21 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 54.15 | 56.13 |
| AT3G58890.1 | Thale cress | extracellular | 33.61 | 55.29 |
| AT3G58940.1 | Thale cress | cytosol | 69.5 | 54.21 |
| AT5G38396.1 | Thale cress | cytosol | 51.87 | 54.11 |
| AT5G38386.2 | Thale cress | cytosol | 45.23 | 54.09 |
| AT3G58820.1 | Thale cress | cytosol | 45.85 | 53.51 |
| AT5G38390.1 | Thale cress | vacuole | 50.62 | 53.51 |
| AT1G52650.1 | Thale cress | cytosol | 51.04 | 52.9 |
| AT4G13960.2 | Thale cress | cytosol | 50.62 | 52.59 |
| AT3G58860.1 | Thale cress | cytosol | 49.59 | 52.3 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 22.82 | 51.4 |
| CDX89484 | Canola | cytosol | 63.28 | 49.11 |
| AT5G38392.1 | Thale cress | cytosol | 21.58 | 47.93 |
| AT3G58880.1 | Thale cress | cytosol | 44.4 | 47.14 |
| AT5G38391.1 | Thale cress | cytosol | 16.6 | 44.94 |
| AT3G59250.1 | Thale cress | cytosol | 34.23 | 38.82 |
| AT4G14096.2 | Thale cress | cytosol | 36.93 | 38.03 |
| AT4G14103.2 | Thale cress | cytosol | 33.4 | 36.34 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 35.89 | 35.74 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 32.78 | 35.67 |
| AT3G49150.1 | Thale cress | cytosol | 34.44 | 35.55 |
| AT2G42730.1 | Thale cress | cytosol | 33.61 | 35.45 |
| AT3G59230.1 | Thale cress | cytosol | 35.68 | 35.03 |
| AT1G58310.1 | Thale cress | cytosol | 36.1 | 34.46 |
| AT3G59200.1 | Thale cress | cytosol | 37.14 | 34.42 |
| AT3G59170.1 | Thale cress | cytosol | 33.61 | 34.25 |
| AT3G59150.1 | Thale cress | cytosol | 33.4 | 33.89 |
| AT3G59160.1 | Thale cress | cytosol | 32.16 | 33.41 |
| AT4G00320.1 | Thale cress | cytosol | 35.06 | 33.33 |
| AT3G59240.1 | Thale cress | cytosol | 34.85 | 33.33 |
| AT5G41840.1 | Thale cress | cytosol | 37.14 | 33.15 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 35.68 | 33.14 |
| AT5G41630.1 | Thale cress | cytosol | 30.91 | 32.75 |
| AT5G41830.2 | Thale cress | cytosol | 34.85 | 32.68 |
| AT3G59270.1 | Thale cress | cytosol | 22.61 | 32.54 |
| AT3G59180.1 | Thale cress | plasma membrane | 30.5 | 30.95 |
| AT5G35926.2 | Thale cress | nucleus | 25.73 | 28.64 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 30.5 | 27.48 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 19.5 | 22.87 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:825062 | ProteinID:AEE79851.1 | EMBL:AK117999 | ProteinID:ANM64157.1 |
| ProteinID:ANM64158.1 | ArrayExpress:AT3G58930 | EnsemblPlantsGene:AT3G58930 | RefSeq:AT3G58930 | TAIR:AT3G58930 | RefSeq:AT3G58930-TAIR-G |
| EnsemblPlants:AT3G58930.1 | TAIR:AT3G58930.1 | EMBL:BT005389 | ProteinID:CAB88310.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR001810 |
| InterPro:IPR032675 | InterPro:LRR_dom_sf | RefSeq:NP_001319795.1 | RefSeq:NP_001326204.1 | RefSeq:NP_191452.2 | PFAM:PF00646 |
| PFAM:PF08387 | PO:PO:0000293 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | UniProt:Q8GXW6 | SMART:SM00579 |
| SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI000000C62D | : | : | : |
Description
F-box/LRR-repeat protein At3g58930 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXW6]
Coordinates
chr3:-:21778174..21780663
Molecular Weight (calculated)
55196.7 Da
IEP (calculated)
4.954
GRAVY (calculated)
-0.176
Length
482 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRVSNLPDG VRGHILSFLP AKHIALTSVL SKSWLNLWKL IPILDIDDSE FLHPEEGKAE RLEIRQSFVD FVDRVLALQD DSPIDRFSLK CITGIHPDHV
101: NRWICNVLQR GVSDLDLFID FSYEDTQEDE DMLPQEMFVS KTLVKLKIRN DRCVDWWCGK GGTSLPMLKS LYIDSDLILW GKMKRFLSSF PVLEELRMAS
201: MEWKESHETV SSASLRKLSI LGTGCEDYVN PKSISFDTPS LLYLNYSDLV AEDYPLVNMG KLLEARINLI VKDDQIKRVR EPNNDLLQDD AGNVVLQFGN
301: VVKLMNGIQN IQILYLTADT LEVLSLCCES MPVFNNLKTL GIKSEEGRGW QAVPALLRNC PHLEYLIIEG LLHNVTDKCG DACDCISRED KGRSLASCPV
401: KKVEIQGFRG TMREINMIGH FLRSFKCLKE MGIFPEEEGP TNFENPGAFE YVEKILKLYN EISNCDVYFL VWGYMRRKWT TQ
101: NRWICNVLQR GVSDLDLFID FSYEDTQEDE DMLPQEMFVS KTLVKLKIRN DRCVDWWCGK GGTSLPMLKS LYIDSDLILW GKMKRFLSSF PVLEELRMAS
201: MEWKESHETV SSASLRKLSI LGTGCEDYVN PKSISFDTPS LLYLNYSDLV AEDYPLVNMG KLLEARINLI VKDDQIKRVR EPNNDLLQDD AGNVVLQFGN
301: VVKLMNGIQN IQILYLTADT LEVLSLCCES MPVFNNLKTL GIKSEEGRGW QAVPALLRNC PHLEYLIIEG LLHNVTDKCG DACDCISRED KGRSLASCPV
401: KKVEIQGFRG TMREINMIGH FLRSFKCLKE MGIFPEEEGP TNFENPGAFE YVEKILKLYN EISNCDVYFL VWGYMRRKWT TQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.