Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- plasma membrane 3
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 61.89 | 56.65 |
| AT4G14103.2 | Thale cress | cytosol | 43.16 | 46.28 |
| AT3G59250.1 | Thale cress | cytosol | 41.05 | 45.88 |
| AT4G14096.2 | Thale cress | cytosol | 45.05 | 45.73 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 46.53 | 45.66 |
| AT3G59270.1 | Thale cress | cytosol | 30.95 | 43.88 |
| AT3G59230.1 | Thale cress | cytosol | 45.26 | 43.79 |
| AT1G58310.1 | Thale cress | cytosol | 44.84 | 42.18 |
| AT3G59200.1 | Thale cress | cytosol | 45.68 | 41.73 |
| AT3G59240.1 | Thale cress | cytosol | 42.74 | 40.28 |
| AT3G49150.1 | Thale cress | cytosol | 38.32 | 38.97 |
| AT3G59160.1 | Thale cress | cytosol | 37.89 | 38.79 |
| AT3G59170.1 | Thale cress | cytosol | 38.53 | 38.69 |
| AT5G41840.1 | Thale cress | cytosol | 43.79 | 38.52 |
| AT5G35926.2 | Thale cress | nucleus | 34.32 | 37.64 |
| AT4G00320.1 | Thale cress | cytosol | 40.0 | 37.48 |
| AT5G41830.2 | Thale cress | cytosol | 40.21 | 37.16 |
| AT5G38391.1 | Thale cress | cytosol | 13.47 | 35.96 |
| AT2G42730.1 | Thale cress | cytosol | 33.26 | 34.57 |
| AT3G58890.1 | Thale cress | extracellular | 21.05 | 34.13 |
| AT5G41630.1 | Thale cress | cytosol | 32.63 | 34.07 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 32.84 | 33.55 |
| AT5G38396.1 | Thale cress | cytosol | 32.21 | 33.12 |
| AT4G13960.2 | Thale cress | cytosol | 32.21 | 32.97 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 30.74 | 32.96 |
| AT1G52650.1 | Thale cress | cytosol | 32.21 | 32.9 |
| AT5G38386.2 | Thale cress | cytosol | 27.37 | 32.26 |
| AT5G38390.1 | Thale cress | vacuole | 30.95 | 32.24 |
| AT3G58950.1 | Thale cress | cytosol | 28.21 | 32.13 |
| AT3G58860.1 | Thale cress | cytosol | 30.74 | 31.95 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 14.32 | 31.78 |
| AT3G59000.1 | Thale cress | cytosol | 32.42 | 31.36 |
| AT3G03040.1 | Thale cress | cytosol | 30.95 | 31.14 |
| AT3G58880.1 | Thale cress | cytosol | 29.26 | 30.62 |
| AT3G03030.1 | Thale cress | cytosol | 30.53 | 30.59 |
| AT3G58930.1 | Thale cress | cytosol | 30.95 | 30.5 |
| AT3G58820.1 | Thale cress | cytosol | 26.11 | 30.02 |
| AT3G59150.1 | Thale cress | cytosol | 29.05 | 29.05 |
| AT5G38392.1 | Thale cress | cytosol | 13.05 | 28.57 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 28.0 | 24.86 |
| AT3G58940.1 | Thale cress | cytosol | 29.05 | 22.33 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 16.42 | 18.98 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:825087 | ProteinID:AEE79886.1 | ArrayExpress:AT3G59180 | EnsemblPlantsGene:AT3G59180 |
| RefSeq:AT3G59180 | TAIR:AT3G59180 | RefSeq:AT3G59180-TAIR-G | EnsemblPlants:AT3G59180.1 | TAIR:AT3G59180.1 | EMBL:AY954855 |
| Unigene:At.54000 | ProteinID:CAB91588.1 | InterPro:FBD | GO:GO:0008150 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt_2 | RefSeq:NP_191477.1 | PFAM:PF07723 | PO:PO:0020090 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 |
| UniProt:Q9LX53 | SMART:SM00579 | SUPFAM:SSF52047 | UniParc:UPI00000A0C40 | SEG:seg | : |
Description
Protein with RNI-like/FBD-like domain [Source:UniProtKB/TrEMBL;Acc:Q9LX53]
Coordinates
chr3:+:21880719..21882459
Molecular Weight (calculated)
54393.1 Da
IEP (calculated)
5.242
GRAVY (calculated)
0.034
Length
475 amino acids
Sequence
(BLAST)
(BLAST)
001: MKERIRFLQV LWILWIEYWH CKAILLSKHR RRWIHKSFKL FVNRLMALQG NAPLNRFSLK CKVRCDSACV DGWIINVLDR GVLDLDLNIS SESDYKLPSE
101: VFLNKTLVRL KLGGKDEFII DVEEVFLPKL KTLYLHGFVC FEDSGVACAK LISGCPVLEE LVMINLMWGL MDVCSVSNPT LKRVTICSEI IDYNPQSVSF
201: DTPNLVYLEF TDVVAIKYPK VNLDSLVDAR LGLRLTPCQT TKARRSVKSV GQGMMGNAAD FLMGISNVKI LYLSFDTLEV LNFCCKTIPL FNNLTYLTIE
301: TNEDVGWESL SNILENCPNL ETIIFKGLHY RDTNQCWDER YRFKDTNKCF EEDADMCMCK PWEATPICLS SSSVKILEVL KFGEVTSYKD DMDRQTEVIK
401: FFLETMPNLE QVILYYDTPF DDDLSILSTE LQMLEKVASP KCKIQVISDN ISYSSTVHSS SSTSGLVFLN NTFPV
101: VFLNKTLVRL KLGGKDEFII DVEEVFLPKL KTLYLHGFVC FEDSGVACAK LISGCPVLEE LVMINLMWGL MDVCSVSNPT LKRVTICSEI IDYNPQSVSF
201: DTPNLVYLEF TDVVAIKYPK VNLDSLVDAR LGLRLTPCQT TKARRSVKSV GQGMMGNAAD FLMGISNVKI LYLSFDTLEV LNFCCKTIPL FNNLTYLTIE
301: TNEDVGWESL SNILENCPNL ETIIFKGLHY RDTNQCWDER YRFKDTNKCF EEDADMCMCK PWEATPICLS SSSVKILEVL KFGEVTSYKD DMDRQTEVIK
401: FFLETMPNLE QVILYYDTPF DDDLSILSTE LQMLEKVASP KCKIQVISDN ISYSSTVHSS SSTSGLVFLN NTFPV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.