Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67786 | Canola | cytosol | 29.65 | 70.79 |
| CDX98355 | Canola | cytosol | 67.76 | 68.25 |
| CDX67783 | Canola | cytosol | 68.47 | 68.15 |
| CDX98354 | Canola | cytosol | 68.24 | 68.08 |
| CDX67785 | Canola | cytosol | 29.65 | 65.62 |
| AT3G49150.1 | Thale cress | cytosol | 55.06 | 50.11 |
| AT4G14096.2 | Thale cress | cytosol | 53.41 | 48.5 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 54.59 | 47.93 |
| AT3G59230.1 | Thale cress | cytosol | 55.29 | 47.86 |
| AT3G59240.1 | Thale cress | cytosol | 56.71 | 47.82 |
| AT4G14103.2 | Thale cress | cytosol | 48.0 | 46.05 |
| AT3G59200.1 | Thale cress | cytosol | 55.06 | 45.0 |
| AT3G59170.1 | Thale cress | cytosol | 49.65 | 44.61 |
| AT3G59160.1 | Thale cress | cytosol | 47.76 | 43.75 |
| AT3G59270.1 | Thale cress | cytosol | 34.35 | 43.58 |
| AT1G58310.1 | Thale cress | cytosol | 51.76 | 43.56 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 52.24 | 42.77 |
| AT4G00320.1 | Thale cress | cytosol | 49.88 | 41.81 |
| AT5G41830.2 | Thale cress | cytosol | 50.12 | 41.44 |
| AT5G41840.1 | Thale cress | cytosol | 52.47 | 41.3 |
| AT3G59180.1 | Thale cress | plasma membrane | 45.88 | 41.05 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 19.29 | 38.32 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 41.88 | 38.28 |
| AT5G38386.2 | Thale cress | cytosol | 35.76 | 37.72 |
| AT5G38390.1 | Thale cress | vacuole | 40.0 | 37.28 |
| AT5G35926.2 | Thale cress | nucleus | 37.65 | 36.95 |
| AT5G41630.1 | Thale cress | cytosol | 39.06 | 36.48 |
| AT3G58890.1 | Thale cress | extracellular | 24.94 | 36.18 |
| AT3G03030.1 | Thale cress | cytosol | 40.24 | 36.08 |
| AT4G13960.2 | Thale cress | cytosol | 39.29 | 35.99 |
| AT3G58860.1 | Thale cress | cytosol | 38.35 | 35.67 |
| AT1G52650.1 | Thale cress | cytosol | 38.82 | 35.48 |
| AT5G38396.1 | Thale cress | cytosol | 38.35 | 35.28 |
| AT2G42730.1 | Thale cress | cytosol | 37.65 | 35.01 |
| AT3G58950.1 | Thale cress | cytosol | 34.12 | 34.77 |
| AT3G59000.1 | Thale cress | cytosol | 40.0 | 34.62 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 35.76 | 34.31 |
| AT3G58930.1 | Thale cress | cytosol | 38.82 | 34.23 |
| AT3G58820.1 | Thale cress | cytosol | 32.47 | 33.41 |
| AT5G38392.1 | Thale cress | cytosol | 16.94 | 33.18 |
| AT3G03040.1 | Thale cress | cytosol | 36.47 | 32.84 |
| AT3G58880.1 | Thale cress | cytosol | 34.82 | 32.6 |
| AT3G59150.1 | Thale cress | cytosol | 36.24 | 32.42 |
| AT5G38391.1 | Thale cress | cytosol | 11.76 | 28.09 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 33.41 | 26.54 |
| AT3G58940.1 | Thale cress | cytosol | 37.18 | 25.57 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 22.12 | 22.87 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:825094 | ProteinID:AEE79896.1 | ArrayExpress:AT3G59250 | EnsemblPlantsGene:AT3G59250 |
| RefSeq:AT3G59250 | TAIR:AT3G59250 | RefSeq:AT3G59250-TAIR-G | EnsemblPlants:AT3G59250.1 | TAIR:AT3G59250.1 | Unigene:At.1509 |
| ProteinID:CAB91595.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0008150 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt_2 | RefSeq:NP_191484.1 | PFAM:PF00646 | PFAM:PF07723 | PFscan:PS50181 | PANTHER:PTHR31639 |
| PANTHER:PTHR31639:SF6 | UniProt:Q9LX46 | SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI00000A4A17 |
Description
F-box/LRR-repeat protein At3g59250 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX46]
Coordinates
chr3:-:21901570..21903284
Molecular Weight (calculated)
47327.6 Da
IEP (calculated)
5.123
GRAVY (calculated)
0.198
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIGPKDKIS NLPEALICHI LSFLPIEDSA LTSVLSKRWR YLFAFRPNLV FDDSVCLRPP CGHGVIPDYV TSWILNVLER GVLDLDLQVN VNGVRLPSKV
101: FVSKSLVRLR IESGNVRGID VDDVFLPKLK SLYLHTIMLG KGEDCFEKLT SGCHVLEELV LNNVYSNVWN RSVSSKTLKR LTLWCTESYD KNPHSVLFDT
201: PNLVYLKYSD YVAAKYPKVN FSSLVDATIG LAMTSDQDAN ASYDALVGNA TDFLMGICNV QILCLSANSL AVLTFCCESI PVFNNLIQLT IKTNQSVGWE
301: SLPALLKNCP ILETLVFEGL LHMYTIKCGD VDGCLCKYSG EVPSCLSSSP VKVLKILRFG EYGIVNQIEM IKIFLETMPH LEQLTVYYNT PIGGDLIEEV
401: SSQLKNFARE ASPNCEIQVI PDVLS
101: FVSKSLVRLR IESGNVRGID VDDVFLPKLK SLYLHTIMLG KGEDCFEKLT SGCHVLEELV LNNVYSNVWN RSVSSKTLKR LTLWCTESYD KNPHSVLFDT
201: PNLVYLKYSD YVAAKYPKVN FSSLVDATIG LAMTSDQDAN ASYDALVGNA TDFLMGICNV QILCLSANSL AVLTFCCESI PVFNNLIQLT IKTNQSVGWE
301: SLPALLKNCP ILETLVFEGL LHMYTIKCGD VDGCLCKYSG EVPSCLSSSP VKVLKILRFG EYGIVNQIEM IKIFLETMPH LEQLTVYYNT PIGGDLIEEV
401: SSQLKNFARE ASPNCEIQVI PDVLS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.