Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98354 | Canola | cytosol | 91.57 | 91.78 |
| CDX98355 | Canola | cytosol | 84.78 | 85.78 |
| CDX67786 | Canola | cytosol | 35.36 | 84.83 |
| CDX67785 | Canola | cytosol | 37.94 | 84.38 |
| AT3G59250.1 | Thale cress | cytosol | 68.15 | 68.47 |
| CDX67782 | Canola | cytosol | 48.71 | 47.71 |
| CDX98353 | Canola | cytosol | 45.9 | 44.95 |
| CDX71909 | Canola | cytosol | 52.22 | 43.64 |
| CDY57500 | Canola | cytosol | 47.78 | 43.04 |
| CDX98357 | Canola | cytosol | 32.79 | 40.46 |
| CDX67788 | Canola | cytosol | 29.51 | 38.89 |
| CDY06017 | Canola | nucleus | 51.52 | 38.0 |
| CDY58541 | Canola | cytosol | 37.7 | 35.23 |
| CDX98340 | Canola | cytosol | 18.03 | 35.16 |
| CDY00593 | Canola | cytosol | 30.21 | 34.96 |
| CDY29185 | Canola | cytosol | 34.66 | 34.66 |
| CDX98338 | Canola | cytosol | 32.79 | 34.4 |
| CDY67935 | Canola | cytosol | 35.6 | 34.31 |
| CDY49258 | Canola | cytosol | 38.17 | 34.17 |
| CDX95484 | Canola | cytosol | 28.1 | 34.09 |
| CDX67768 | Canola | cytosol | 32.55 | 34.07 |
| CDX84742 | Canola | cytosol | 36.3 | 34.07 |
| CDX98342 | Canola | cytosol | 31.38 | 34.01 |
| CDY59410 | Canola | cytosol | 40.28 | 33.99 |
| CDY33289 | Canola | cytosol | 40.28 | 33.99 |
| CDY65605 | Canola | cytosol | 22.01 | 33.94 |
| CDX67770 | Canola | cytosol | 31.15 | 33.93 |
| CDX76838 | Canola | cytosol | 36.3 | 33.77 |
| CDY34798 | Canola | peroxisome | 35.83 | 33.33 |
| CDY65456 | Canola | peroxisome | 37.94 | 33.26 |
| CDX98334 | Canola | golgi, mitochondrion, plasma membrane | 24.59 | 33.23 |
| CDX98339 | Canola | cytosol, extracellular | 31.85 | 33.17 |
| CDX67769 | Canola | cytosol | 32.32 | 33.09 |
| CDY18865 | Canola | plastid | 23.18 | 32.57 |
| CDY65604 | Canola | cytosol | 36.77 | 32.44 |
| CDY50412 | Canola | cytosol, nucleus, peroxisome | 33.26 | 32.05 |
| CDX89015 | Canola | cytosol | 33.49 | 30.17 |
| CDY29195 | Canola | cytosol | 35.13 | 27.83 |
| CDY00610 | Canola | mitochondrion | 33.49 | 27.24 |
| CDX89484 | Canola | cytosol | 37.94 | 26.09 |
| CDY07824 | Canola | cytosol | 33.26 | 25.91 |
| CDY07837 | Canola | cytosol | 32.79 | 25.74 |
| CDY29197 | Canola | cytosol | 34.43 | 25.57 |
| CDY06019 | Canola | cytosol | 51.76 | 25.52 |
| CDY29196 | Canola | cytosol | 32.79 | 25.45 |
| CDY07822 | Canola | cytosol | 34.66 | 25.0 |
| CDX98352 | Canola | cytosol, nucleus, plasma membrane | 43.56 | 24.51 |
| CDX67781 | Canola | cytosol | 43.56 | 23.75 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 21.31 | 22.14 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EnsemblPlants:CDX67783 | ProteinID:CDX67783 | ProteinID:CDX67783.1 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00098976001 |
| InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 | PFAM:PF00646 | PFAM:PF07723 |
| PFscan:PS50181 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 |
| UniParc:UPI0004EDC593 | : | : | : | : | : |
Description
BnaA07g18230D
Coordinates
chrLK031787:-:2245787..2247340
Molecular Weight (calculated)
48156.1 Da
IEP (calculated)
4.803
GRAVY (calculated)
0.025
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: MISSKKMDRI SNLPEALISH ILSFLPTEES ALTSVLSKKW RYLFADRPNL DFDGSVIHDF SLKCGHGVES DCVRNWILNV LERGVSDLDL HFNLVGVSLP
101: SEVFMSKSLE RLRIESKNVI PMDMEDVFLP KLKTLYVNKV MLGEGDDCFE KVTSGCHVLE ELVLINVYSD FWNRSVSSKT LKSLILSCCM EYDKNPDSVS
201: FDTPNVVYLE YCDYVSGKYP KVKFNSLVEA SIDLVMTSEQ HEHASYEHLV GDVTDFLMGI RNVQTLYISA NTLEVLTFCC DHIPVFHNMI GLTIQSRKSG
301: WESLPALLKK CPNLETLVFD GLSHTFTVKC MDVDGCLCKY SGEVPTCLSS SPVKVLKILR FGDAGLEKET DLIKHFLETM PQLEQLMIYY DTLFDDNVIE
401: LSSELKSFPT KASPSCEIQV IFGNLSG
101: SEVFMSKSLE RLRIESKNVI PMDMEDVFLP KLKTLYVNKV MLGEGDDCFE KVTSGCHVLE ELVLINVYSD FWNRSVSSKT LKSLILSCCM EYDKNPDSVS
201: FDTPNVVYLE YCDYVSGKYP KVKFNSLVEA SIDLVMTSEQ HEHASYEHLV GDVTDFLMGI RNVQTLYISA NTLEVLTFCC DHIPVFHNMI GLTIQSRKSG
301: WESLPALLKK CPNLETLVFD GLSHTFTVKC MDVDGCLCKY SGEVPTCLSS SPVKVLKILR FGDAGLEKET DLIKHFLETM PQLEQLMIYY DTLFDDNVIE
401: LSSELKSFPT KASPSCEIQV IFGNLSG
001: MDIGPKDKIS NLPEALICHI LSFLPIEDSA LTSVLSKRWR YLFAFRPNLV FDDSVCLRPP CGHGVIPDYV TSWILNVLER GVLDLDLQVN VNGVRLPSKV
101: FVSKSLVRLR IESGNVRGID VDDVFLPKLK SLYLHTIMLG KGEDCFEKLT SGCHVLEELV LNNVYSNVWN RSVSSKTLKR LTLWCTESYD KNPHSVLFDT
201: PNLVYLKYSD YVAAKYPKVN FSSLVDATIG LAMTSDQDAN ASYDALVGNA TDFLMGICNV QILCLSANSL AVLTFCCESI PVFNNLIQLT IKTNQSVGWE
301: SLPALLKNCP ILETLVFEGL LHMYTIKCGD VDGCLCKYSG EVPSCLSSSP VKVLKILRFG EYGIVNQIEM IKIFLETMPH LEQLTVYYNT PIGGDLIEEV
401: SSQLKNFARE ASPNCEIQVI PDVLS
101: FVSKSLVRLR IESGNVRGID VDDVFLPKLK SLYLHTIMLG KGEDCFEKLT SGCHVLEELV LNNVYSNVWN RSVSSKTLKR LTLWCTESYD KNPHSVLFDT
201: PNLVYLKYSD YVAAKYPKVN FSSLVDATIG LAMTSDQDAN ASYDALVGNA TDFLMGICNV QILCLSANSL AVLTFCCESI PVFNNLIQLT IKTNQSVGWE
301: SLPALLKNCP ILETLVFEGL LHMYTIKCGD VDGCLCKYSG EVPSCLSSSP VKVLKILRFG EYGIVNQIEM IKIFLETMPH LEQLTVYYNT PIGGDLIEEV
401: SSQLKNFARE ASPNCEIQVI PDVLS
Arabidopsis Description
F-box/LRR-repeat protein At3g59250 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX46]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.