CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59410	Canola	cytosol	97.43	97.43
CDX67782	Canola	cytosol	36.36	42.2
CDX98353	Canola	cytosol	35.57	41.28
CDX98355	Canola	cytosol	34.39	41.23
CDX67783	Canola	cytosol	33.99	40.28
CDX98354	Canola	cytosol	33.79	40.14
CDY57500	Canola	cytosol	36.96	39.45
CDY29185	Canola	cytosol	33.0	39.11
CDX67785	Canola	cytosol	14.62	38.54
CDY58541	Canola	cytosol	33.99	37.64
CDX98340	Canola	cytosol	16.21	37.44
CDX98338	Canola	cytosol	30.04	37.35
CDX98342	Canola	cytosol	29.05	37.31
CDX67786	Canola	cytosol	13.04	37.08
CDX98339	Canola	cytosol, extracellular	30.04	37.07
CDX71909	Canola	cytosol	37.35	36.99
CDY49258	Canola	cytosol	34.78	36.9
CDX84742	Canola	cytosol	33.0	36.7
CDY65604	Canola	cytosol	34.98	36.57
CDX67770	Canola	cytosol	28.26	36.48
CDY00593	Canola	cytosol	26.48	36.31
CDX67769	Canola	cytosol	29.64	35.97
CDX67768	Canola	cytosol	28.85	35.78
CDY67935	Canola	cytosol	31.23	35.67
CDX76838	Canola	cytosol	31.62	34.86
CDY65456	Canola	peroxisome	33.4	34.7
CDX95484	Canola	cytosol	24.11	34.66
CDY34798	Canola	peroxisome	31.42	34.64
CDX89015	Canola	cytosol	31.82	33.97
CDX67788	Canola	cytosol	21.74	33.95
CDY06017	Canola	nucleus	38.74	33.85
CDX98357	Canola	cytosol	23.12	33.81
CDX98334	Canola	golgi, mitochondrion, plasma membrane	20.75	33.23
CDY65605	Canola	cytosol	18.18	33.21
CDY50412	Canola	cytosol, nucleus, peroxisome	28.85	32.96
CDY18865	Canola	plastid	19.37	32.24
CDY29195	Canola	cytosol	33.79	31.73
CDY00610	Canola	mitochondrion	32.02	30.86
CDY29196	Canola	cytosol	31.23	28.73
CDY07824	Canola	cytosol	30.43	28.1
CDY29197	Canola	cytosol	31.62	27.83
CDY07822	Canola	cytosol	31.42	26.86
CDX89484	Canola	cytosol	32.41	26.41
CDY07837	Canola	cytosol	27.47	25.55
GSMUA_Achr2P13780_001	Banana	cytosol	17.79	21.9
CDX67781	Canola	cytosol	33.2	21.46
CDX98352	Canola	cytosol, nucleus, plasma membrane	32.02	21.34
CDY06019	Canola	cytosol	36.36	21.25

Protein Annotations

EnsemblPlants:CDY33289	EnsemblPlantsGene:GSBRNA2T00054062001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	InterPro:IPR001810	PANTHER:PTHR31639	PANTHER:PTHR31639:SF6
PFAM:PF00646	ProteinID:CDY33289	ProteinID:CDY33289.1	SEG:seg	SMART:SM00579	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI0004EE2C38	UniProt:A0A078H6Y8	MapMan:35.1	:	:

Description

BnaA01g19560DBnaA01g19560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H6Y8]

Coordinates

chrLK032310:+:162225..164024

Molecular Weight (calculated)

57075.8 Da

IEP (calculated)

6.537

GRAVY (calculated)

-0.086

Length

506 amino acids

Sequence
(BLAST)

001: MDLKRRKHGK ENEVGGAINK LPEDLRCHIL SFLSTKEAAS TSVLSKSWRD LFTLLPSLDL DDSTFMPDQR PEECKRTSFM EFGNRVLALH SNSPITKFSV
101: RCHKGVDSYL VGDWIVKALR RGATDVTLIL LFPSRLLHTC THPNIFFHGQ NLIKLKVGCG GLGPFQHSLF REDVIFTKLR TLHLNSIDIS RHYGDVIFAR
201: LLSKCPVLEE LIVNCIKWHG WISGASVSSS TLKRLTIDCE HYYHESDYML RHGPDEEDSD NLGEPLVVPA HFGTQKPRFV SFDTPNLIYL NYADFVALNY
301: ALVKLDSLVE ARLDVGPNQG QMRARDSDEF EAPWDATNLI MGIHNVQTLH LTSDTLEVIA DFCKMVPVFH NLNHLSIESD DERGWHALPL LLINCPSLQT
401: LVFHGLYHRV TDGCGDACDC ISPWSSSSCL SSCPVKILKI LNFGATCGEM SLVKHFLKKM PLLEQLAIVL DLDASLEEDL RLSQVFEDLR MAPRASPKCK
501: LEVVNY

Best Arabidopsis Sequence Match ( AT3G59210.1 )
(BLAST)

001: MDDCSKDIIN CLPDNLLCQI LSNLSTKEAA LTSLLSKRWR YLFALVPNLD FDVLPSLHPE VAMQDQDQTS FIDFVDRVLK LRGKDHINKF SLKCGDGIED
101: EDVFPWILNT LRHGVSDLSL HVSPSLVYWL PSKVFASKTL VRLKIGPKDG PRVKLRNVCL PKLKTLNLDS VVFEEGKIGF AKLLSGCPVL EELSLLNLAW
201: DRWDSCSVSS KILKRLTLYC AHSSRNPKSV SFDTPNVVYF EYSDNIANKY PKVNFDSLVE ASIGIRMTKV QKANARYVSD VDEETEMVGN ATDLLMGICN
301: VKTLYLSYDT LETLNLCCQV IPVFNNLTHL TIESHPELGW ESLPNLLKSC PNLGTLVFQG LLHKATDRCG DVCMCQGLEN SHSCLSSSPV KCLKILKFGE
401: TNDDDDMEIE MEQIKNFLEK MPNLEQLIIY YESSIDNDLV RVSSQLQEVP TVASLKCKIQ VISDNLSLSS TLPISLSMEN GFHL

Arabidopsis Description

F-box/LRR-repeat protein At3g59210 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW80]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.