CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98353	Canola	cytosol	83.03	83.03
AT3G59210.1	Thale cress	cytosol, nucleus, peroxisome	78.67	70.87
CDX67785	Canola	cytosol	21.79	49.48
CDX98355	Canola	cytosol	47.71	49.29
CDX67783	Canola	cytosol	47.71	48.71
CDY57500	Canola	cytosol	51.83	47.68
CDX98354	Canola	cytosol	46.33	47.42
CDX98357	Canola	cytosol	37.39	47.11
CDX71909	Canola	cytosol	54.13	46.18
CDX67788	Canola	cytosol	34.17	45.99
CDX67786	Canola	cytosol	17.2	42.13
CDY06017	Canola	nucleus	53.9	40.59
CDY00593	Canola	cytosol	32.11	37.94
CDX98340	Canola	cytosol	18.81	37.44
CDX67768	Canola	cytosol	34.86	37.25
CDX98334	Canola	golgi, mitochondrion, plasma membrane	26.83	37.03
CDX98338	Canola	cytosol	33.95	36.36
CDY33289	Canola	cytosol	42.2	36.36
CDY59410	Canola	cytosol	42.2	36.36
CDX67770	Canola	cytosol	32.57	36.22
CDY67935	Canola	cytosol	36.7	36.12
CDX98339	Canola	cytosol, extracellular	33.95	36.1
CDX98342	Canola	cytosol	32.11	35.53
CDY65605	Canola	cytosol	22.48	35.38
CDY58541	Canola	cytosol	36.93	35.23
CDY49258	Canola	cytosol	38.07	34.8
CDY29185	Canola	cytosol	33.95	34.66
CDX67769	Canola	cytosol	33.03	34.53
CDX84742	Canola	cytosol	35.32	33.85
CDX76838	Canola	cytosol	35.32	33.55
CDY65604	Canola	cytosol	37.16	33.47
CDY34798	Canola	peroxisome	34.86	33.12
CDY65456	Canola	peroxisome	36.93	33.06
CDX95484	Canola	cytosol	26.38	32.67
CDY50412	Canola	cytosol, nucleus, peroxisome	32.57	32.05
CDX89015	Canola	cytosol	33.95	31.22
CDY18865	Canola	plastid	21.56	30.92
CDY00610	Canola	mitochondrion	33.49	27.81
CDY29195	Canola	cytosol	33.72	27.27
CDY06019	Canola	cytosol	52.29	26.33
CDX98352	Canola	cytosol, nucleus, plasma membrane	45.41	26.09
CDY07822	Canola	cytosol	35.32	26.01
CDX67781	Canola	cytosol	46.56	25.93
CDX89484	Canola	cytosol	36.93	25.93
CDY29197	Canola	cytosol	33.95	25.74
CDY07824	Canola	cytosol	32.34	25.73
CDY07837	Canola	cytosol	30.73	24.63
CDY29196	Canola	cytosol	30.96	24.55
GSMUA_Achr2P13780_001	Banana	cytosol	19.5	20.68

Protein Annotations

EnsemblPlants:CDX67782	EnsemblPlantsGene:GSBRNA2T00098975001	Gene3D:3.80.10.10	InterPro:FBD	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_2	ncoils:Coil	PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	PFAM:PF07723	ProteinID:CDX67782
ProteinID:CDX67782.1	SEG:seg	SMART:SM00579	SUPFAM:SSF52047	UniParc:UPI0004EE2D1D	MapMan:35.1

Description

BnaA07g18220D

Coordinates

chrLK031787:+:2243616..2245464

Molecular Weight (calculated)

49453.6 Da

IEP (calculated)

4.728

GRAVY (calculated)

-0.078

Length

436 amino acids

Sequence
(BLAST)

001: MSTRNMDDLP DNLLCQILWR HLFALVPNLD FESFSSQHTD HTSFIDFVDR VLKLRGEDHV NKFSLKCGDG FEDEDVYPWI SNVLRHGVSD LDLHVSSSLV
101: YWLPSKVFVS KTLVRLKIGP EDGPKVKLRN VCLPRLKTLI LDSVVFVEGE IGFAKLLSGS PVLEELSLRN LEWGYWGSCS VASKVLKRLT LCCAHCDDNP
201: KSVSFDTPNV VYFKYSDNIA QKYPKLNFDS LVEASIDIRM TNDQKANEER EMVGNATELL MGICNVKALY LSYDTLETLN FCCEAIPAFS NLTHLTIESN
301: QEVGWESLPE LLKNCPNLET LVFQGLIHKA TEKCGDVCLC KGLQKSSSSL SHCPVKFLKI LKFGETCDDN DEADMEMEME MIKHFLEKML NLEQLIIYYN
401: TSIQDDLVEV LNQLQMLPEV ASFKCKIQVI SDSLSL

Best Arabidopsis Sequence Match ( AT3G59210.2 )
(BLAST)

001: MDDCSKDIIN CLPDNLLCQI LSNLSTKEAA LTSLLSKRWR YLFALVPNLD FDVLPSLHPE VAMQDQDQTS FIDFVDRVLK LRGKDHINKF SLKCGDGIED
101: EDVFPWILNT LRHGVSDLSL HVSPSLVYWL PSKVFASKTL VRLKIGPKDG PRVKLRNVCL PKLKTLNLDS VVFEEGKIGF AKLLSGCPVL EELSLLNLAW
201: DRWDSCSVSS KILKRLTLYC AHSSRNPKSV SFDTPNVVYF EYSDNIANKY PKVNFDSLVE ASIGIRMTKV QKANARYVSD VDEETEMVGN ATDLLMGICN
301: VKTLYLSYDT LETLNLCCQV IPVFNNLTHL TIESHPELGW ESLPNLLKSC PNLGTLVFQG LLHKATDRCG DVCMCQGLEN SHSCLSSSPV KCLKILKFGE
401: TNDDDDMEIE MEQIKNFLEK MPNLEQLIIY YESSIDNDLV RVSSQLQEVP TVASLKCKIQ VISDNLSLSS TLPISLSMEN GFHL

Arabidopsis Description

F-box/LRR-repeat protein At3g59210 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW80]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.