CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29196	Canola	cytosol	84.0	87.82
CDY07822	Canola	cytosol	89.39	86.82
CDY29185	Canola	cytosol	62.61	84.31
CDY07824	Canola	cytosol	78.09	81.93
CDY29195	Canola	cytosol	73.04	77.92
CDY07837	Canola	cytosol	72.87	77.02
AT3G58950.1	Thale cress	cytosol	42.09	58.03
AT3G58890.1	Thale cress	extracellular	28.7	56.31
CDY65604	Canola	cytosol	46.26	54.96
CDY49258	Canola	cytosol	45.57	54.93
CDX98340	Canola	cytosol	18.78	49.32
CDX98342	Canola	cytosol	33.57	48.98
CDX98338	Canola	cytosol	34.26	48.4
CDY65605	Canola	cytosol	23.3	48.38
CDY58541	Canola	cytosol	38.09	47.92
CDX67768	Canola	cytosol	33.74	47.55
CDX98339	Canola	cytosol, extracellular	33.57	47.07
CDX67769	Canola	cytosol	34.09	47.0
CDX67770	Canola	cytosol	32.0	46.94
CDX76838	Canola	cytosol	36.52	45.75
CDX84742	Canola	cytosol	36.0	45.49
CDX95484	Canola	cytosol	27.83	45.45
CDY34798	Canola	peroxisome	36.17	45.32
CDY65456	Canola	peroxisome	38.09	44.97
CDY50412	Canola	cytosol, nucleus, peroxisome	33.22	43.12
CDY00593	Canola	cytosol	27.48	42.82
CDX98334	Canola	golgi, mitochondrion, plasma membrane	23.13	42.09
CDY67935	Canola	cytosol	32.35	41.99
CDY18865	Canola	plastid	22.09	41.78
CDX67785	Canola	cytosol	12.17	36.46
CDX89484	Canola	cytosol	38.78	35.91
CDX98355	Canola	cytosol	25.91	35.31
CDX67783	Canola	cytosol	25.57	34.43
CDX98353	Canola	cytosol	25.91	34.17
CDX98354	Canola	cytosol	25.22	34.04
CDX67782	Canola	cytosol	25.74	33.95
CDY57500	Canola	cytosol	26.78	32.49
CDY59410	Canola	cytosol	28.0	31.82
CDY33289	Canola	cytosol	27.83	31.62
CDX89015	Canola	cytosol	25.74	31.22
CDX98357	Canola	cytosol	18.09	30.06
CDY06017	Canola	nucleus	30.09	29.88
CDX67786	Canola	cytosol	9.22	29.78
CDX71909	Canola	cytosol	26.26	29.55
CDY00610	Canola	mitochondrion	26.26	28.76
CDX67788	Canola	cytosol	16.17	28.7
GSMUA_Achr2P13780_001	Banana	cytosol	15.13	21.17
CDX98352	Canola	cytosol, nucleus, plasma membrane	25.04	18.97
CDX67781	Canola	cytosol	25.39	18.65
CDY06019	Canola	cytosol	26.09	17.32

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078GVM6	EnsemblPlants:CDY29197	ProteinID:CDY29197
ProteinID:CDY29197.1	ncoils:Coil	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00042099001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	SMART:SM00256	SMART:SM00579
SUPFAM:SSF81383	UniParc:UPI0004EE99B3	:	:	:	:

Description

BnaA06g25600DBnaA06g25600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVM6]

Coordinates

chrLK032233:-:145423..150049

Molecular Weight (calculated)

64972.4 Da

IEP (calculated)

4.595

GRAVY (calculated)

-0.351

Length

575 amino acids

Sequence
(BLAST)

001: MDRIGSLPDE VLSHILSFLT TKEAALTSIL SKRWRNLFTL VPNLDIDDSG KRERDGILQS FMDFVDKVLA SQGDTPIKKF SLKCKTGIDT DRVNQWICSS
101: NTLLPMLKTL CFESKWILLC NDLQMFLAAF PVLEEFHMAD IEWPQSDQSV SSESLMKLTI YAGGFEDFRN PKRISFDTPK LVYLEYSDFV AADYPKVNLP
201: NLAEAVLILK VTEHQIDLIR EPDDEDDVSL RLGNVWKLIS GLRNVNKLFI SAETLEVLSL CCESMPVFNN LKSLHIISDA DLGWQAMPAL LRNSPHLETL
301: ILKGLLHHVT DKCGDACDCI SREDKGRSLS SCPVKKLQIR GFKGTVREKG MIRHFLESFP CLDEMEVYAD QSDNDPTNVE VNRIYKIVAY KVHAEDVSTE
401: TVLQSKTMSQ TQMEEISSQF TPRNNRNKYD FVYILHGSPP PPTPQDMSED YLKEQLDAAE TKLAELNEEY KERQRVHDAM FDGIVEQYPM IASALKARQA
501: ATDSEASNDQ EKKRDVEALL EIMGDLYPDF ASALKAMRGT ALERGEPSRD QGEMAELDQP TSTAVAADLL PRDGD

Best Arabidopsis Sequence Match ( AT3G58950.1 )
(BLAST)

001: MDLFSSLPDE VLCHILSFLT TKEAALASVV SKRWRNQFAL VPNLDIDEEG KREREEILLS FMDFVDNVLA LQADSPIKKF SLKCKTGVHP RRLDAWARLG
101: PVLPMLKTLI IDSAWIRCDT IETFLPTFPV LEELSMSINE WPDWDETVTS ASLRKLSIFT IGCENFSNPK SISFDIPSLV YFEYYDMVAE DYPKVNLTSV
201: VEARISLLLD QDQIKRGRAP NNDEDDVLLR LRNGWKLMSG IRNVQKLYIS LDTLQVLSLC CKSMPVFNNL KLLSVKTAEN EGWEGMPVLL RNCPHLETLV
301: FEGLRHFVTN KCGDACDYVS REDKGRSLVS CPVKKLQIKG FRGTIRELEM IKHFLYSFRC LEKVEIYAEE KGRTRTDLEV PGMFELIARM LRLYNEFYSC
401: DVQFLVRSSL DKKWTAQ

Arabidopsis Description

Putative F-box protein At3g58950 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXQ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.