CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49258	Canola	cytosol	51.24	47.59
CDY65604	Canola	cytosol	49.21	45.04
CDX67769	Canola	cytosol	42.21	44.84
CDX98338	Canola	cytosol	40.86	44.47
CDX67768	Canola	cytosol	40.86	44.36
CDX98342	Canola	cytosol	39.28	44.16
CDY29185	Canola	cytosol	42.21	43.79
CDX84742	Canola	cytosol	43.57	42.42
CDX67770	Canola	cytosol	37.47	42.35
CDY58541	Canola	cytosol	43.57	42.23
CDX98339	Canola	cytosol, extracellular	39.05	42.2
CDY65456	Canola	peroxisome	45.82	41.68
CDY34798	Canola	peroxisome	42.66	41.18
CDX76838	Canola	cytosol	42.66	41.18
CDY00593	Canola	cytosol	34.09	40.92
CDY67935	Canola	cytosol	40.86	40.86
CDX98340	Canola	cytosol	19.64	39.73
CDX95484	Canola	cytosol	31.15	39.2
CDY65605	Canola	cytosol	23.48	37.55
CDX67786	Canola	cytosol	14.9	37.08
CDX98334	Canola	golgi, mitochondrion, plasma membrane	25.73	36.08
CDY29195	Canola	cytosol	42.66	35.06
CDX98355	Canola	cytosol	32.05	33.65
CDY29196	Canola	cytosol	41.53	33.45
CDX67783	Canola	cytosol	32.05	33.26
CDY29197	Canola	cytosol	43.12	33.22
CDY18865	Canola	plastid	22.57	32.89
CDX98353	Canola	cytosol	32.28	32.8
CDX67782	Canola	cytosol	32.05	32.57
CDX89484	Canola	cytosol	45.6	32.53
CDX98354	Canola	cytosol	31.15	32.39
CDY07824	Canola	cytosol	39.73	32.12
CDY07822	Canola	cytosol	42.44	31.76
CDY57500	Canola	cytosol	31.6	29.54
CDX71909	Canola	cytosol	33.86	29.35
CDY59410	Canola	cytosol	33.41	29.25
CDY07837	Canola	cytosol	35.89	29.23
CDY33289	Canola	cytosol	32.96	28.85
CDX89015	Canola	cytosol	29.35	27.43
CDX98357	Canola	cytosol	20.99	26.88
CDX67788	Canola	cytosol	18.96	25.93
CDY06017	Canola	nucleus	33.63	25.73
CDX67785	Canola	cytosol	10.84	25.0
CDY00610	Canola	mitochondrion	29.57	24.95
GSMUA_Achr2P13780_001	Banana	cytosol	21.67	23.36
CDY06019	Canola	cytosol	34.54	17.67
CDX98352	Canola	cytosol, nucleus, plasma membrane	25.73	15.02
CDX67781	Canola	cytosol	25.96	14.69

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078IKH6	EnsemblPlants:CDY50412	ProteinID:CDY50412
ProteinID:CDY50412.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00096651001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF00646
PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EC427A
SEG:seg	:	:	:	:	:

Description

BnaC03g45060DBnaC03g45060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKH6]

Coordinates

chrLK032907:-:52633..54138

Molecular Weight (calculated)

50837.0 Da

IEP (calculated)

7.695

GRAVY (calculated)

-0.014

Length

443 amino acids

Sequence
(BLAST)

001: MDHISGLPDE ILCHILSFCP TKRAALTSVL STRWRDLIAF VPNLYIDDSA FLHPELRKRE RYEILQSFMA FVDSVLALQG DSPIGEFSLK CKTASRDRVD
101: GWICNVLQRG VSDVELLIED DVDYLLPQEM LVSRTLTKLR LRNARLPGGV EAAFFLPMLK TLVLKEARVY SDKLEMLLPT LPVLEELYIH PLTRRRSRCT
201: VSSASLKELG ITVTAEGKSS ISKSFSFDTP NLLYLNYCDF MAEDYPKVNL SNVVEVVLNL IASTSQINQI RSSNNNNEVL WYGNVWKLMN GIRNVKKLAV
301: SDSTFQWFPL CCELVNNLEW LRFCCFNPYG CKAMPVILRK CPHLDTLVFQ GLSEYWKDKC RDACDCISRE DKSRLLMKKI QIKGFRGTNA EMGVLAHFLK
401: YFPCLKEIQI YAGENCTTDI FEHIVKLVNL YNESYQLVVH FLK

Best Arabidopsis Sequence Match ( AT3G58900.4 )
(BLAST)

001: MDLFSSLPNE LLYHILSFLS TKEAALTSVL SKRWRNLFAF VPYLEFDDSV FLHPEERKRE KEGILQSFMD FVDRVLDLHG DSLIKTFSLK CKTGVDSDHV
101: DRWICNVLAR GVSDLDLFID FRDLYSLPHE VGVSRTLVVL RVGSESDLYW WQKFLCLPML KTLVLDSCWL CIGQFQILLL ACPALEELDM TNTRWKDSNV
201: TVSSSILKEL TIDLHGCCSV VNLKSLSFDA PSLVYFYYCD SLAEDYPQVN LKNLVEAQIN LLLTQAQIEQ VRALNNEMLV ADDVFPGLGN AWKLITGLRN
301: VQQLYLSPDT LEVLSRCCEG MPVFNNLKVL SIWSDMNRGW QAMPVLLRNC PHLETLIIEG LLHYATDKCG DVCDCISRDY KDHSLTSCPV KKLQIYEFRG
401: TIRELEMIKH FLKIFPCLKE MDIYAHENSH TLFKDPTIFE RVGKVMNFYN MLSSCSVQLL VRGPL

Arabidopsis Description

F-box/RNI-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J721]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.